FC929814

Overview
NameFC929814
Unique NameFC929814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig306 contig Ccv1_Contig306:101..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.045e-94
Identity = 163/193 (84.46%), Postives = 176/193 (91.19%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVAGA 581
            YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG RFSVGSGSPYAYGVLD+GYK+DM++          IYHAT+RD ASGGV SVY+VGP+GWKK++GDDVG+LH+ YYPV P+TVEQEM EV GA
Sbjct:   80 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.015e-93
Identity = 164/189 (86.77%), Postives = 171/189 (90.48%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 569
            YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG RFSVGSGSPYAYGVLDSGYK+DMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELHYHYYPV P+T EQ M E
Sbjct:   82 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEE 270          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.325e-93
Identity = 165/191 (86.39%), Postives = 170/191 (89.01%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVA 575
            YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG RFSVGSGSPYAYGVLDSGYKFDMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELHYHYYPV P T E  M E A
Sbjct:   82 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAPITAEHVMEEAA 272          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 6.005e-62
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 542
            YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:   84 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 6.005e-62
Identity = 110/179 (61.45%), Postives = 137/179 (76.54%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 539
            YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y  V+
Sbjct:   84 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVS 262          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 6.005e-62
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 542
            YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:   84 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.338e-61
Identity = 111/180 (61.67%), Postives = 137/180 (76.11%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 542
            Y++S+SVKK+IEI P +LGTMAGGAADC FW R LG +CRL+EL NK  ISV  ASK+LANI+YSY+G GLS+GTMI GWD+TGP LYYVD++G RL G RFS GSGS YAYGVLD+G+K+DM+           +YHAT RDA SGG  +VY+V  +GWKK+S DD  +L+  YY + P
Sbjct:   87 YVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLYQKYYNIVP 266          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 2.282e-61
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 542
            YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YA+GV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y    P
Sbjct:   84 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYTSSIP 263          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.980e-61
Identity = 109/175 (62.29%), Postives = 134/175 (76.57%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 527
            YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  S+Y+V  +GW ++S D+V +LH  Y
Sbjct:   84 YIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLHDKY 258          
BLAST of FC929814 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.296e-56
Identity = 106/175 (60.57%), Postives = 129/175 (73.71%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 527
            YI+SQ+V+K+IEINP +LGTMAGGAADC FW R L  +CR++EL NK  ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  F+VGSGS YAYGVLD G + DM+           I+ A  RDA SGG  +VY+VGP GW+++S  DV  LH  Y
Sbjct:   80 YIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAGLHDGY 254          
The following BLAST results are available for this feature:
BLAST of FC929814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PSB5_SPIOL2.045e-9484.46Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5A_ARATH1.015e-9386.77Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5B_ARATH1.325e-9386.39Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5_PONAB6.005e-6261.11Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_MOUSE6.005e-6261.45Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_HUMAN6.005e-6261.11Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_DICDI1.338e-6161.67Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_RAT2.282e-6160.56Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_BOVIN2.980e-6162.29Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_CHICK1.296e-5660.57Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AE09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929814 ID=FC929814; Name=FC929814; organism=Citrus clementina; type=EST; length=809bp
GCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTAC
ATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAG
AAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAA
TTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTAT
CGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGAC
TGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAA
CACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGAC
AGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAG
AAGAGCTATTTATCATGCAACATTCAGAGATGCAGCCAGTGGTGGTGTTG
CAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGTGAT
GATGTTGGAGAGCTTCACTACCATTATTATCCAGTCACGCCCAGTACGGT
GGAGCAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTCTTGCTCAAT
TTGGACCAGGTTTGAGATATTCCTCATATTCACAGATCCAGTGGAGGACT
TTACGGATTTGCTTCTGAACTTTGTCAATGTACCTTGGGTTGATCCCGGC
GATGACTTGTGAATTCAACCTAGTTAAGTTGATGCTTTAAGAACCCTGCA
TTTTCTTTTGGTATTTTCATTATGACCAGTACAGTTCTATTTTCTATTAA
GCATTTTGT
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