FC929824

Overview
NameFC929824
Unique NameFC929824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:137..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 436.417 bits (1121), Expect = 7.582e-122
Identity = 220/243 (90.53%), Postives = 232/243 (95.47%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            PSIEVAVVDIS SRI AWNSD LPIYEPGLDGVVKQCRGKNLFFSTDV+KHV EADIVFVS+NTPTKTQGLGAG+AADLTYWESAAR+IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF ILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEGQKA++ LKDVYA WVPE +ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV  V+++VGTDS+IGPKFLNA VG
Sbjct:   25 PSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVG 267          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 2.697e-119
Identity = 215/243 (88.48%), Postives = 231/243 (95.06%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P +EVAVVDISV RINAWNSD LPIYEPGLD VVKQCRGKNLFFSTDV+KHV EADIVFVS+NTPTKT+GLGAG+AADLTYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF ILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEG KAV+ LK+VYAHWVPE QI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA+V+ V++AVGTDS+IGPKFLN+ VG
Sbjct:   25 PDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSYAVGTDSRIGPKFLNSSVG 267          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 9.591e-117
Identity = 212/243 (87.24%), Postives = 227/243 (93.42%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P IEVAVVDISV RINAWNSD LPIYEPGLD +VKQCRGKNLFFSTDV+KHV EADIVFVS+NTPTKT GLGAG+AADLTYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKIL HNSKGIKF ILSNPEFLAEGTAI DLFNPDRVLIGGRETPEG KAV+ LK+VYA+WVPE QI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+TGA+V+ V++AVGTDS+IG KFLNA VG
Sbjct:   25 PDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCESTGADVTQVSYAVGTDSRIGSKFLNASVG 267          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.199e-88
Identity = 165/244 (67.62%), Postives = 196/244 (80.33%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I + +VD S  RI  WNSD LPIYEPGLD VVK+CR  NLFFSTD++  + EAD++F+S+NTPTKT G G G AADL Y ESAAR+IA++++S+KIVVEKSTVPV+ AE+I  IL  N K GI + ILSNPEFLAEGTAI DL N DRVLIGG ETPEG +AV+ L  +Y HW+P+  ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEATGA+VS VA AVG DS+IG KFL A VG
Sbjct:   24 PDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVG 267          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.222e-87
Identity = 163/244 (66.80%), Postives = 195/244 (79.92%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I+V VVD++ +RINAWNSD LPIYEPGL  VV+ CRG+NLFFST +D  + EAD+VF+S+NTPTKT G+G G AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +   +LSNPEFLAEGTAI+DL NPDRVLIGG ++PEGQKAV+AL  VY HWVP+ +ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V  VA A+GTD +IG KFL A VG
Sbjct:   28 PKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCRGRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTDQRIGNKFLKASVG 271          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.084e-87
Identity = 164/244 (67.21%), Postives = 193/244 (79.10%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I V VVD++ +RINAWNS  LPIYEPGL  VV+ CRGKNLFFST++D  + EAD+VF+S+NTPTKT G+G G AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +   +LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQKAV+AL  VY HWVP+ +ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V  VA A+G D +IG KFL A VG
Sbjct:   28 PEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.722e-87
Identity = 164/244 (67.21%), Postives = 192/244 (78.69%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST++D  + EAD+VF+S+NTPTKT G+G G AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +   +LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP  +ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V  VA A+G D +IG KFL A VG
Sbjct:   28 PEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.722e-87
Identity = 164/244 (67.21%), Postives = 192/244 (78.69%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST++D  + EAD+VF+S+NTPTKT G+G G AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +   +LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP  +ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATGA+V  VA A+G D +IG KFL A VG
Sbjct:   28 PEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 7.919e-87
Identity = 164/244 (67.21%), Postives = 191/244 (78.28%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I V VVDI+ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST++D  + EAD+VF+S+NTPTKT G+G G AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +   +LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP  +ILTTN WS+ELSKL ANAFLAQRISS+N++SALCEATGA+V  VA A+G D +IG KFL A VG
Sbjct:   28 PEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of FC929824 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.351e-86
Identity = 162/244 (66.39%), Postives = 193/244 (79.10%), Query Frame = 2
Query:   11 PSIEVAVVDISVSRINAWNSDHLPIYEPGLDGVVKQCRGKNLFFSTDVDKHVSEADIVFVSINTPTKTQGLGAGEAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFHILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEYQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSHVAFAVGTDSKIGPKFLNAIVG 739
            P I V VVD++ +RINAWNS  LPIYEPGL  VV+ CRGKNLFFST++D  + EAD+VF+S+NTPTKT G+G G AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +   +LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP+ +ILTTN WS+ELSKLAANAFLAQRISS+N++SALCE+TGA+V  VA A+G D +IG KFL A VG
Sbjct:   28 PEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIGMDQRIGNKFLKASVG 271          
The following BLAST results are available for this feature:
BLAST of FC929824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
UGDH_SOYBN7.582e-12290.53UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH2.697e-11988.48Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH9.591e-11787.24Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME4.199e-8867.62UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK1.222e-8766.80UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_MOUSE2.084e-8767.21UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_PONAB2.722e-8767.21UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN2.722e-8767.21UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_BOVIN7.919e-8767.21UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_RAT1.351e-8666.39UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929824 ID=FC929824; Name=FC929824; organism=Citrus clementina; type=EST; length=740bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCATCTCCCCATCTATGAGCCTGGACTT
GATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGA
TGTTGATAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAATCAATA
CCCCAACCAAAACTCAAGGTCTCGGTGCTGGCGAAGCTGCAGATCTGACA
TACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAA
AATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCTGAAGCAATTG
AAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCACATCCTTTCA
AACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCC
AGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCG
TCAAAGCCTTGAAAGATGTGTATGCACACTGGGTCCCAGAATACCAAATT
TTGACCACCAACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGC
TTTCTTGGCACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCG
AGGCAACTGGAGCTAATGTCAGTCACGTGGCATTTGCTGTTGGTACAGAC
TCTAAGATTGGGCCCAAATTCTTGAATGCTATTGTTGGGT
back to top