FC929845

Overview
NameFC929845
Unique NameFC929845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15054 contig Ccv1_Contig15054:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: NSP5_ARATH (Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.088e-69
Identity = 117/206 (56.80%), Postives = 153/206 (74.27%), Query Frame = 1
Query:   97 MASAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 714
            M   +  W+K+ QKG+GPGARSSHA+T+VG KVY FGGE  P + +DN+L+VFDLET  WS+A  TG+ P P  GV+M  +G TIY++GGRD   +  N L+S+DT TN+W LL+  + G P RSYHS A DDR VY+FGG    GR+N L  +DVVD+KW++YP+AGE CKGRG PGL+V +G+IWV++GF G E+ D+HCFD A
Sbjct:    1 MCPVENKWLKVGQKGAGPGARSSHAMTVVGNKVYCFGGELKPTIHIDNDLYVFDLETQEWSIAPATGEAPFPCFGVSMVTIGSTIYVYGGRDDKRR-YNGLHSYDTETNEWKLLAPVEEGLPGRSYHSMAGDDRKVYVFGGVTAKGRVNTLHAYDVVDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFDGNELGDIHCFDLA 205          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: NSP1_ARATH (Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.987e-63
Identity = 112/201 (55.72%), Postives = 145/201 (72.14%), Query Frame = 1
Query:  112 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDP 711
            G WIK++QKG GPG R SH I  VG K+Y+FGGEFTP  P+D +L+VFDLET TWS++  TGDVP    +GV M +VG T+Y+FGGRD + ++ N  YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP
Sbjct:  151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSVGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDP 350          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: NSP2_ARATH (Nitrile-specifier protein 2 OS=Arabidopsis thaliana GN=NSP2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.682e-62
Identity = 110/203 (54.19%), Postives = 144/203 (70.94%), Query Frame = 1
Query:  109 KGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 714
            +G WIK++QKG GPG R SH I  VG K+++FGGE TP  P+D +L+VFDLET TWS++  TGDVP    +GV M ++G ++Y+FGGRD + K  N  YSFDT  N+W LL+  + GP  RS+HS  AD+ +VY+FGG   + RL  L  +++VD KW+Q  + G +C  RGG GL V QGK+WVVYGF G EVDDVHC+DPA
Sbjct:  151 RGKWIKVEQKGEGPGPRCSHDIAQVGNKIFSFGGELTPNQPIDKHLYVFDLETRTWSISPATGDVPNLSCLGVRMVSIGSSLYVFGGRDASRK-YNGFYSFDTTKNEWKLLTPVEQGPTPRSFHSMTADENNVYVFGGVSATVRLKTLDAYNIVDHKWVQCSTPGGSCSVRGGAGLEVVQGKVWVVYGFNGCEVDDVHCYDPA 352          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: NSP4_ARATH (Nitrile-specifier protein 4 OS=Arabidopsis thaliana GN=NSP4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.429e-61
Identity = 106/201 (52.74%), Postives = 143/201 (71.14%), Query Frame = 1
Query:  112 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDP 711
            G W K+D+ G GPG R SH I  VG K+Y+FGGEFTP  P+D +L+VFD+E+ TWS++  TGD+P    +GV M ++G T+Y+FGGRD + ++ N  YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP
Sbjct:  300 GKWTKVDENGDGPGLRCSHDIAQVGNKIYSFGGEFTPNQPIDKHLYVFDIESRTWSISPATGDIPTLSCLGVCMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDP 499          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: NSP3_ARATH (Nitrile-specifier protein 3 OS=Arabidopsis thaliana GN=NSP3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 108/202 (53.47%), Postives = 140/202 (69.31%), Query Frame = 1
Query:  112 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPA 714
            G WIK++Q G GPG R SH I  VG K+Y+FGGE  P  P+D +L+VFDLET TWS+A  TGDVP    +GV M +VG T+Y FGGRD + ++ N  YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG G   R+  L  +++VD+ W    + G++   RGG GL V QGK+W+VYGF G EVDDVH +DPA
Sbjct:  151 GNWIKVEQNGEGPGLRCSHGIAQVGNKIYSFGGELIPNQPIDKHLYVFDLETRTWSIAPATGDVPHLSCLGVRMVSVGSTLYTFGGRDFS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVGAMDRIKTLDSYNIVDKTWFHCSNPGDSFSIRGGAGLEVVQGKVWIVYGFNGCEVDDVHFYDPA 351          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: ESP_ARATH (Epithiospecifier protein OS=Arabidopsis thaliana GN=ESP PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.806e-48
Identity = 102/221 (46.15%), Postives = 133/221 (60.18%), Query Frame = 1
Query:  109 KGTWIKLDQKG-SGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGD--AGPPHRSYHSTAADDRHVYIFGGCGVSGRLN------DLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFA---------GVEVDDVHCFDPA 714
            +G WIK+ QKG +GPG RSSH I  VG K+Y+FGGE TP   +D +L+VFD  T TWS+A   GD P    +GV M AVG  IY+FGGRD  ++      S+DT T++WT L+  D   GP  R++HS A+D+ HVY+FGG    G +N       +  +++ D KW Q P  G+N + RGG G  V QGKIWVVYGFA           E + V  +DPA
Sbjct:    6 QGQWIKVGQKGGTGPGPRSSHGIAAVGDKLYSFGGELTPNKHIDKDLYVFDFNTQTWSIAQPKGDAPTVSCLGVRMVAVGTKIYIFGGRD-ENRNFENFRSYDTVTSEWTFLTKLDEVGGPEARTFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQLPDPGDNFEKRGGAGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQFYDPA 225          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: RABEK_CHICK (Rab9 effector protein with kelch motifs OS=Gallus gallus GN=RABEPK PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  112 GTWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPV-DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 579
            GTW   +  G  P  R+ H  +  +G  +Y FGG      PV D  LHVFD   L W+  D  GD P PR G  + AVG  +++ GG  G     N+L+  DT   +W  ++     P  R+ HS+A    H+YIFGG G  G L+  + + + +++W
Sbjct:  122 GTWESPEVTGIPPLPRTFHTSSAAIGDCLYVFGGGDKGAEPVKDQQLHVFDTVALAWTQPDTHGDPPSPRHGHVVVAVGTKLFIHGGLAG-DIFYNDLFCIDTTDMKWVKIAATGDVPGGRASHSSAVFKDHLYIFGGIGPDGTLDTTYKYHIEEQQW 278          

HSP 2 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 56/189 (29.63%), Postives = 82/189 (43.39%), Query Frame = 1
Query:  142 SGPGARSSHAITIVG---QKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTM-AAVGHTIYMFGGRDGTHKELNE--LYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVD 690
            SG   R  HA  +      +++ FGG    R    + + V D E  TW   +VTG  P PR   T  AA+G  +Y+FGG D   + + +  L+ FDT    WT        P  R  H   A    ++I GG       NDL+  D  D KW++  + G+   GR      V +  +++   F G+  D
Sbjct:   79 SGLRPRYEHATFLSACRPPRLWVFGGAH--RAGNRSCVQVLDPEIGTWESPEVTGIPPLPRTFHTSSAAIGDCLYVFGGGDKGAEPVKDQQLHVFDTVALAWTQPDTHGDPPSPRHGHVVVAVGTKLFIHGGLAGDIFYNDLFCIDTTDMKWVKIAATGDVPGGRASHSSAVFKDHLYI---FGGIGPD 262          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: RABEK_HUMAN (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  115 TWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPV-DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 579
            TW   +     P  R+ H  +  +G ++Y FGG      PV D  LHVFD  TLTWS  +  G+ P PR G  M A G  +++ GG  G  +  ++L+  D    +W  L+   A P   + HS  A  +HVYIFGG   +G L+ ++ +   ++ W
Sbjct:  125 TWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHW 280          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: RABEK_BOVIN (Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  115 TWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPV-DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 579
            TW   +  G  P  R+ H  +  +G ++Y FGG      PV D  LHVFD  TLTWS  +  G  P PR G  M A G  +++ GG  G +   ++L+  D    +W  L    A P   + HS  A  +H+Y+FGG   +G LN ++ + +  + W
Sbjct:  125 TWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTKLFIHGGLAGDN-FYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHW 280          
BLAST of FC929845 vs. ExPASy Swiss-Prot
Match: RABEK_MOUSE (Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   97 MASAKGTWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPVDN-NLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 579
            M+    TW   +  GS P  R+ H  +  +G ++Y FGG      PV++  LHVFD  TLTWS  +  G  P PR G  M A G  +++ GG  G  K  ++L+  D     W  L    A P   + H+  A   HVY+FGG   +G LN ++ +    + W
Sbjct:  127 MSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGLAG-DKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHW 288          
The following BLAST results are available for this feature:
BLAST of FC929845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NSP5_ARATH1.088e-6956.80Nitrile-specifier protein 5 OS=Arabidopsis thalian... [more]
NSP1_ARATH1.987e-6355.72Nitrile-specifier protein 1 OS=Arabidopsis thalian... [more]
NSP2_ARATH1.682e-6254.19Nitrile-specifier protein 2 OS=Arabidopsis thalian... [more]
NSP4_ARATH2.429e-6152.74Nitrile-specifier protein 4 OS=Arabidopsis thalian... [more]
NSP3_ARATH5.984e-6053.47Nitrile-specifier protein 3 OS=Arabidopsis thalian... [more]
ESP_ARATH1.806e-4846.15Epithiospecifier protein OS=Arabidopsis thaliana G... [more]
RABEK_CHICK6.693e-1934.81Rab9 effector protein with kelch motifs OS=Gallus ... [more]
RABEK_HUMAN1.142e-1833.76Rab9 effector protein with kelch motifs OS=Homo sa... [more]
RABEK_BOVIN1.947e-1833.76Rab9 effector protein with kelch motifs OS=Bos tau... [more]
RABEK_MOUSE2.543e-1833.74Rab9 effector protein with kelch motifs OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC34001A09EF PostHarvC1 Citrus clementina cDNA clone C34001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929845 ID=FC929845; Name=FC929845; organism=Citrus clementina; type=EST; length=717bp
GGAGAGCCAGAAGAAAGAAATCAGGCTGCAGAGTGGAGACTGGAGAGTAA
CTCTTGGGTCTTGGCCATTCTCCCCTATCCTTTTCCCAAGTCATAAATGG
CTTCTGCCAAAGGCACATGGATCAAGCTTGACCAAAAGGGTTCCGGGCCT
GGAGCCAGAAGCTCGCATGCAATTACCATAGTAGGACAAAAGGTCTATGC
TTTCGGGGGCGAGTTCACACCACGTGTCCCGGTTGACAACAACCTCCATG
TCTTCGACCTCGAAACCCTAACATGGTCTGTGGCCGATGTTACTGGGGAC
GTCCCTCCGCCACGCGTCGGTGTCACAATGGCTGCGGTTGGACATACCAT
CTATATGTTTGGTGGTCGGGATGGTACACACAAGGAGCTCAATGAGCTGT
ACTCTTTTGACACGCGTACAAACCAGTGGACCCTATTATCTAACGGTGAT
GCTGGCCCCCCTCATAGGAGCTACCACTCAACGGCCGCTGATGATCGACA
CGTGTACATCTTCGGCGGTTGTGGTGTTTCAGGCCGGCTTAATGATCTAT
GGGGTTTTGATGTTGTTGATAGAAAATGGATCCAATATCCATCGGCAGGG
GAGAACTGCAAGGGTAGAGGTGGGCCCGGGTTGATAGTGACCCAGGGGAA
GATATGGGTTGTGTATGGTTTTGCTGGAGTGGAAGTGGATGATGTGCATT
GCTTTGATCCAGCCCAT
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