FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_MAGSM (Bifunctional protein folD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.256e-59
Identity = 121/216 (56.02%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +IDGKA+AQ++R E+  EV  L   +   PGLAVV+VG    SQ YV  K++AC   GI SF  +L    S+AEL++ + +LN    VHGILVQLPLPKHI+E+KVL  IS  KD DGFHP N+G+L     DP F PCTP G +E+LK SGV  KGK AVV+GRSNIVG PV+L+LL A ATVTI HS TPD    V+ ADIV+AA G++ M+
Sbjct:    2 AHVIDGKAIAQSVREELRMEVERLKLNHQLTPGLAVVLVGADPASQVYVRNKKRACETAGIASFSHELAATTSQAELLALIEQLNQDDAVHGILVQLPLPKHIDEQKVLEAISPSKDADGFHPYNVGRLVT--GDPTFQPCTPWGVMEMLKVSGVDPKGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVKRADIVVAAVGRANMV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_GEOUR (Bifunctional protein folD OS=Geobacter uraniireducens (strain Rf4) GN=folD PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.254e-58
Identity = 123/217 (56.68%), Postives = 151/217 (69.59%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A IIDGKA+A  IR EI  EV  L+ K G  PGLAVV+VG    S+ YVSMK KAC +VGI S +  LP   SEA+L+  +H+LN+ P +HGIL+QLPLPK I+ EKVL  IS EKD DGFHP N+G+L +    PLF PCTP G + +LK +GV + GK  VVVGRSNIVG PV+ + L+ +ATVT+ HS T D  + V  AD+VIAA GQ  MIK
Sbjct:    2 AKIIDGKAIAAKIRGEITAEVAKLASK-GVTPGLAVVLVGEDPASKVYVSMKEKACKDVGIFSDEYKLPVDTSEADLLLLIHKLNSDPKIHGILIQLPLPKQIDTEKVLEAISPEKDADGFHPYNVGRLVI--GKPLFQPCTPYGVMVMLKEAGVELAGKEVVVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVGMADVVIAAVGQPEMIK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_GEOTN (Bifunctional protein folD OS=Geobacillus thermodenitrificans (strain NG80-2) GN=folD PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.254e-58
Identity = 120/216 (55.56%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A II G  +A+TIR+E+A+EV  L    G  PGLAV++VG    S SYV  K+KACAEVGI+S     P  +SE EL++K+ ELNA P VHGILVQLPLP HI E  V+  I+ EKDVDGFHP+N+GK+ +    P FLPCTP G L ++K +G+ I GK  VVVGRSNIVG PV  L L+  ATVT  HS TPD  +I R+ADI+I A G++ +I
Sbjct:    3 AQIISGTELAKTIRAELADEVAKLKAN-GIEPGLAVILVGDDPASHSYVKGKQKACAEVGIRSLLYTFPATISEEELLAKIQELNADPTVHGILVQLPLPAHIREWSVIETIAPEKDVDGFHPINVGKMMI--GQPAFLPCTPHGVLVMVKSAGIDIAGKHVVVVGRSNIVGKPVGQLFLREHATVTYAHSKTPDLAAITRQADILIVAVGKARLI 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LISMO (Bifunctional protein folD OS=Listeria monocytogenes GN=folD PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.238e-57
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G +  +K
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKQPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LISMH (Bifunctional protein folD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.616e-57
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G +  +K
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LISMC (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=folD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.616e-57
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G +  +K
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LISIN (Bifunctional protein folD OS=Listeria innocua GN=folD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.616e-57
Identity = 118/215 (54.88%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+  V ELN    +HGILVQLPLPKHI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G +  +K
Sbjct:    4 IIDGKKLAKEIQEKVTSEVAELV-KQGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVTEEKLLKVVEELNEDNTIHGILVQLPLPKHISEEKVIDAISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LISMF (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.601e-57
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G +  +K
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD2_GEOMG (Bifunctional protein folD 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=folD2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.601e-57
Identity = 122/217 (56.22%), Postives = 153/217 (70.51%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            +TIIDGKA+A  +R+EIA EV++L EK G +PGLA V+VG    S+ YV MK  AC E+G+ S    LP   +EAEL++ V  LN+ P +HGILVQLPLPK IN + +L  IS  KDVDGFHP N+G+L M G+ P F PCTP G + +L+ +GV + GK  VVVGRSNIVG PV+L+ L+  ATVTI HS T D  S V+EAD+VIAA G   MIK
Sbjct:    2 STIIDGKAIAAKLRAEIATEVKILKEK-GIIPGLATVLVGEDPASEVYVRMKGNACQELGMHSVKHTLPATTTEAELLALVARLNSDPTIHGILVQLPLPKQINSDTILEAISPVKDVDGFHPYNVGRL-MVGK-PTFQPCTPYGVMVMLREAGVDLAGKEVVVVGRSNIVGKPVALMCLQQHATVTICHSKTRDLPSKVKEADVVIAAVGVPEMIK 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_PELPD (Bifunctional protein folD OS=Pelobacter propionicus (strain DSM 2379) GN=folD PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.368e-56
Identity = 122/217 (56.22%), Postives = 151/217 (69.59%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A IIDGKA+A  IRSEIA  VR L  K G  PGLAVV+VG  + S+ YVSMK KAC + GI S +  L  + SEAEL++ V  LN  P +HGILVQLPLP  I+ +KVL  IS  KDVDGFHP N+G+L++    P+F PCTP G + +L+ +GV +KGK  VVVGRSNIVG PV+++ L   ATVT+ HS T D   +VR AD+VIAA G+  MIK
Sbjct:    2 AHIIDGKAIAAKIRSEIASGVRELQGK-GVTPGLAVVLVGDDQASRVYVSMKEKACNDAGIFSVEHKLAAETSEAELLALVELLNNDPKIHGILVQLPLPSQIDTDKVLEAISPFKDVDGFHPYNVGRLSV--GKPVFQPCTPYGVMVMLREAGVELKGKEVVVVGRSNIVGKPVAMMCLAEHATVTLCHSRTRDLPDVVRRADVVIAAVGRPEMIK 215          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_MAGSM2.256e-5956.02Bifunctional protein folD OS=Magnetococcus sp. (st... [more]
FOLD_GEOUR4.254e-5856.68Bifunctional protein folD OS=Geobacter uraniireduc... [more]
FOLD_GEOTN4.254e-5855.56Bifunctional protein folD OS=Geobacillus thermoden... [more]
FOLD_LISMO1.238e-5754.88Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMH1.616e-5754.88Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMC1.616e-5754.88Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISIN1.616e-5754.88Bifunctional protein folD OS=Listeria innocua GN=f... [more]
FOLD_LISMF3.601e-5754.88Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD2_GEOMG3.601e-5756.22Bifunctional protein folD 2 OS=Geobacter metallire... [more]
FOLD_PELPD1.368e-5656.22Bifunctional protein folD OS=Pelobacter propionicu... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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