FC929858
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 5.913e-60 Identity = 105/188 (55.85%), Postives = 141/188 (75.00%), Query Frame = 2 Query: 137 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 +AP A G R SSL++PIMLL+GH+ VY K +P G+ +AS DR I LW+V+GDC N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D S+ I +GGIDND+KVWDLR+ + Sbjct: 40 AAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 227
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 7.722e-60 Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 2 Query: 131 PYSAPQAPGPN-----GKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 P + PQ P G R SSL++PIMLL+GH+ VY K +P G+ +AS DR I LW+V+GDC N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP LV +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D S+ I +GGIDND+KVWDLR+ + Sbjct: 33 PGAGPQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 227
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.720e-59 Identity = 102/179 (56.98%), Postives = 137/179 (76.54%), Query Frame = 2 Query: 164 GKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 G R SSL++PIMLL+GH+ VY K +P G+ +AS DR I LW+V+GDC N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D S+ I +GGIDND+KVWDLR+ + Sbjct: 48 GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 226
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.115e-58 Identity = 101/179 (56.42%), Postives = 137/179 (76.54%), Query Frame = 2 Query: 164 GKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 G R SSL++PIMLL+GH+ VY K +P G+ +AS DR I LW+V+GDC N+ LKG+ A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D S+ I +GGIDND+KVWDLR+ + Sbjct: 48 GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 226
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: SNR40_DICDI (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56 Identity = 96/179 (53.63%), Postives = 132/179 (73.74%), Query Frame = 2 Query: 164 GKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 G +RTS LE PIM L GH+ +Y+ K N GT +ASG D++IFLW+V+G+C N+ VLKGHK IL+LHW+TD ++I +A DK++ WD G+ IK++ EH+ VNSCCP+RRGPPLV SGSDD +A+++D R +G+ F KY +T+V FSDAS+ + TGGIDN ++VWD+R E Sbjct: 44 GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKGHKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLVASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQE 222
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: CWF17_SCHPO (Cell cycle control protein cwf17 OS=Schizosaccharomyces pombe GN=cwf17 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35 Identity = 73/180 (40.56%), Postives = 104/180 (57.78%), Query Frame = 2 Query: 170 QRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGESKH 709 QRTS L P + + GH + V + +P+G+ ASG DR I LW+V GD KN+ VL G K AI DL W+ D + +S D L +WD +G++I+K H VN+ + G L+ S SDD T K+WD R + I+T +KY +TAV+ + ++ GGID +K+WDLR H Sbjct: 34 QRTSDLNVPNLQMFGHTAEVLVARFDPSGSYFASGGMDRQILLWNVFGDVKNYGVLNGCKGAITDLQWSRDSRVVYCSSSDTHLMSWDAVSGQKIRKHKGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQGTQVFIGGIDGAIKIWDLRNNHCSH 213
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24 Identity = 60/166 (36.14%), Postives = 95/166 (57.23%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 L GH AV ++K +P G +AS S DR I +W + D K L GH I D+ W++D S+++SAS DKTL+ WDV +GK +K + H+++V CC L++SGS D T K+W+++ ++T ++AV F+ + I +G D ++WD G+ Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQ 200 HSP 2 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 L GH + V+ NP +I SGS D + +W V G C L H + + +H+ GS I+S S D R WD +G+ +K + + ++ S +++ + D T KLWD + ++T+ +KY I A + I +G DN V +W+L+ E Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKC--LKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 288
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24 Identity = 68/199 (34.17%), Postives = 104/199 (52.26%), Query Frame = 2 Query: 110 PMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 P E + P SAPQ K + + L GH +A+ ++K +P G +AS + D I +W + G CK L GH I D+ W++D S+++SAS DKTL+ WDV +GK +K + H+ FV CC L+VSGS D + K+W+++ ++T I+AV F I +G D ++WD G+ Sbjct: 7 PAERAQSPLSAPQRVEEPQKPNYALR----LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKK--TLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQ 198 HSP 2 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 L GH V+ NP +I SGS D + +W V G C L H + I +H+ +GS I+S S D R WD +G+ ++ +A+ + S +++ + D T KLWD + ++T+ +KY I A + + +G DN V +W+L+ E Sbjct: 119 LKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKC--LKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQTKE 286
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23 Identity = 63/195 (32.31%), Postives = 106/195 (54.36%), Query Frame = 2 Query: 131 PYSAPQAPGPN--GKQRTSSLESPIML-LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHV-HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 P ++ Q P PN G + S +M L GH ++ + K +P G + + S D+ + +W++ H C+ L GHK + D+ W++D ++SAS DKTL+ +++ T + K + HN++V CC LVVSGS D + ++WD++ I+T P ++AVSF+ I +G D V++WD G+ Sbjct: 55 PGASAQTPNPNAAGASASGSANYKLMCTLEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICER--TLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYV-FCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQ 246 HSP 2 Score: 68.1662 bits (165), Expect = 5.076e-11 Identity = 45/170 (26.47%), Postives = 76/170 (44.71%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 L GH + V+ NP +++ SGS D + +W V G C L H + + + + DGS I S S D +R WD G+ IK + + + + +++ + D T KLWD + ++ + KY I A + I +G D + +W+L+ E Sbjct: 167 LKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMC--IKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTRE 334
BLAST of FC929858 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23 Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 L GH AV ++K +P G +AS S DR I +W + D K L GH I D+ W++D S+++SAS DKTL+ WD+ +GK +K + H+++V CC L++SGS D T K+W+++ ++T ++AV F+ + I +G D ++WD G+ Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYERTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQ 200 HSP 2 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 2 Query: 206 LTGHQSAVYTMKVNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASE*IYTGGIDNDVKVWDLRKGE 700 L GH + V+ NP +I SGS D + +W V G C L H + + +H+ GS I+S S D R WD +G+ +K + + ++ S +++ + D T KLWD + ++T+ +KY I A + I +G DN V +W+L+ E Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKC--LKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 288 The following BLAST results are available for this feature:
BLAST of FC929858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 244
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929858 ID=FC929858; Name=FC929858; organism=Citrus clementina; type=EST; length=709bpback to top |