FC929876

Overview
NameFC929876
Unique NameFC929876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9497 contig Ccv1_Contig9497:305..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.288e-85
Identity = 151/243 (62.14%), Postives = 183/243 (75.31%), Query Frame = 3
Query:    6 IEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE------EEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FGS  V+ Y+I TG VDVNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  DAYGNKP D+I   +     +R + +E LLKG+  + E       E  V + V      G+E+KEYP+D +LPDI NGVYGTD+FRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP  RKG+C +GD CEYA
Sbjct:   30 VEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYA 272          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.288e-85
Identity = 151/239 (63.18%), Postives = 182/239 (76.15%), Query Frame = 3
Query:    3 EIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            EIEE    ++DE  FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ DVNR C  +  TALHCAV+G + S  E++K+LL ASA  NCVDA GNKPVDL+    +   +  ++A+E+LL G H ++ EEEE       +L    T+   YP D SLPDIN GVYGTDDFRM++FK+KPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP  RKG+CP+GD CEYA
Sbjct:   48 EIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE------EELKSVVTK---YPADASLPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYA 277          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.790e-83
Identity = 145/237 (61.18%), Postives = 177/237 (74.68%), Query Frame = 3
Query:    3 EIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            E+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK DVNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VDA GN+P+D+     +     R++A+ELLL+G       +E V   +  +SK       YP D SLPDIN GVYG+D+FRMY+FK+KPCSRAYSHDWTEC FVHPGENARRRDPRKYPYTCVPCP  RKG+CP+GD CEYA
Sbjct:   45 EVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSK-------YPADASLPDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYA 274          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.939e-69
Identity = 135/263 (51.33%), Postives = 167/263 (63.50%), Query Frame = 3
Query:    6 IEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP------------------------VPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            IE     VDE   WYGR+ GSK M  + RTP+M+AA +GS+ V+K ++     DVNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +DA G +  D+I V  K  L   K  ++ LL  D +   E  L    N+P                         P   K    KKEYP+D SLPDI N +Y TD+FRMY+FK++PCSRAYSHDWTECPFVHPGENARRRDPRK+ Y+CVPCP  RKGAC +GD CEYA
Sbjct:   64 IERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPTGENGGSGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA 324          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.181e-66
Identity = 132/257 (51.36%), Postives = 161/257 (62.65%), Query Frame = 3
Query:   30 DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLL---KGDHTIF-------------------EEEELVNIPVPQLSKDG-------TEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            DE   WYGRR        E RTP+M+AA +GS+AVL+ ++    VDVNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  DA G +P D+I V  K  +   K A++ LL   K  H +                    E+    +  V   +K         +EKKEYP+D SLPDI N +Y +D+FRMY+FKI+PCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP  RKG C +GD CEYA
Sbjct:   95 DEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLLGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCRRGDMCEYA 344          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.225e-65
Identity = 123/259 (47.49%), Postives = 169/259 (65.25%), Query Frame = 3
Query:   27 VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE---------------------------ELVNIPVPQLSKDGT---EKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            +++   WY R+   ++M  E+RTP+M+A+++GS+ V+K+++   + ++N +CG D  TALHCA +G + +S +VVKLLLS  AD N  DA+GN+PVD++ V+  +P    +  +E +LK D  I E+                            + V+ P      D T   EKKEYPID SLPDI +G+Y TD+FRM++FKI+PCSRAYSHDWTECPF HPGENARRRDPRK+ YTCVPCP  +KG+C QGD CEYA
Sbjct:   64 INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISEDLHASSSSLGSSFRSLSSSPDNGSSLLSLDSVSSPTKPHGTDVTFASEKKEYPIDPSLPDIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCKQGDMCEYA 320          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.110e-58
Identity = 114/238 (47.90%), Postives = 150/238 (63.03%), Query Frame = 3
Query:    6 IEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRK-GACPQGDGCEYA 713
            +EE+   +     WYG    G  ++G E RT  M+AA++GS  VL YV+     +  RA  +DG T LH A AGGA ++    +LLL+A A V+ + A G +  DL+P A  +     ++AI LLLK            +   P        KKEYP D++LPD+ +G++ TD+FRMY+FK+KPCSRAYSHDWTECPFVHPGENARRRDPR+Y Y+CVPCP  RK G+C +GD CEYA
Sbjct:   44 VEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAA-----EKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYA 276          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.773e-56
Identity = 120/258 (46.51%), Postives = 153/258 (59.30%), Query Frame = 3
Query:    9 EEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN-IPVPQLSKDGTE--------------------KKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRK-GACPQGDGCEYA 713
            EE     D    WYGR        +E RTP+M+AA +GS  V+  ++  G  VDVNR  G+DG TALHCA +GG++++  VVKLLL+A AD    D+ G  P D+I     SP       +E+LL     +     + +    P LS    E                    KKEYP+D +LPDI + VY +D+FRM+AFK++PCSRAYSHDWTECPFVHPGENARRRDPRK+PYT VPCP  R+ G CP GD CE++
Sbjct:   48 EEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP--DALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFS 298          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.752e-48
Identity = 107/230 (46.52%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   30 DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGA-CPQGDGCEYA 713
            DEP+ WY     +   G E  TP+M+AA++GSV  L  ++     VD NRA  S   T LH A AGG+ S+   V  LL+A AD   +D                  H ++RA +L+    +++  +  L+++           +KE+P D SLPDI NG Y +DDFRMY+FK++ CSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP  +KGA C +GD CEYA
Sbjct:   39 DEPAPWY-----TPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLD------------------HLQRRASDLVALPPNSLPLKNHLLSLL--------GARKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYA 237          
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  438 LSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713
            LSK G     Y ID S+P+I++ +YG+D+FRMYA+KIK C R  SHDWTECP+ H GE A RRDPR+Y Y  V CP  R GAC +GD CE+A
Sbjct:   25 LSKPGNAGA-YEIDPSIPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGACHRGDSCEFA 115          
The following BLAST results are available for this feature:
BLAST of FC929876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
C3H66_ARATH5.288e-8562.14Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H29_ARATH5.288e-8563.18Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH3.790e-8361.18Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H30_ARATH6.939e-6951.33Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H24_ORYSJ7.181e-6651.36Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H56_ARATH1.225e-6547.49Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H33_ORYSJ1.110e-5847.90Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H50_ORYSJ1.773e-5646.51Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H67_ORYSJ6.752e-4846.52Zinc finger CCCH domain-containing protein 67 OS=O... [more]
C3H54_ARATH3.852e-2758.70Zinc finger CCCH domain-containing protein 54 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34001D06EF PostHarvC1 Citrus clementina cDNA clone C34001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929876 ID=FC929876; Name=FC929876; organism=Citrus clementina; type=EST; length=714bp
GAGAAATAGAAGAGAAGGGTTTTGATGTTGATGAGCCCAGCTTCTGGTAT
GGTAGGAGAATTGGGTCAAAAAAGATGGGATTTGAAGAGAGGACCCCAAT
CATGATTGCTGCCATGTTTGGAAGTGTTGCGGTATTGAAATATGTTATTG
AAACAGGCAAAGTTGATGTGAATAGGGCCTGTGGATCTGATGGTTTCACT
GCCCTTCACTGTGCTGTTGCTGGTGGTGCCAAATCTTCCTTTGAGGTGGT
CAAGCTCTTACTCAGTGCATCTGCTGATGTTAACTGTGTTGATGCGTATG
GGAATAAGCCAGTCGATCTCATTCCAGTTGCTATGAAATCACCACTCCAT
TCAAGAAAAAGGGCAATAGAGTTATTGTTGAAAGGCGATCATACTATTTT
TGAAGAGGAAGAATTGGTGAATATCCCTGTGCCTCAGTTATCAAAAGATG
GAACTGAGAAGAAAGAGTACCCAATTGATGTATCGTTGCCTGATATAAAC
AATGGAGTTTATGGAACTGATGATTTTAGAATGTACGCTTTTAAGATAAA
GCCATGCTCGAGGGCTTATTCACATGATTGGACAGAGTGCCCATTTGTTC
ATCCGGGTGAGAATGCTAGGAGGAGAGATCCTAGGAAGTATCCTTACACC
TGTGTCCCCTGCCCCTGAGTCCGTAAGGGGGCATGCCCCCAGGGGGATGG
ATGTGAGTATGCTC
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