FC929876
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 5.288e-85 Identity = 151/243 (62.14%), Postives = 183/243 (75.31%), Query Frame = 3 Query: 6 IEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE------EEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 +EE+G + +D WYGRR+GSKKMGFEERTP+MIAA+FGS V+ Y+I TG VDVNR+CGSDG TALHCAV+G + +S E+V LLL SA+ + DAYGNKP D+I + +R + +E LLKG+ + E E V + V G+E+KEYP+D +LPDI NGVYGTD+FRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP RKG+C +GD CEYA Sbjct: 30 VEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYA 272
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 5.288e-85 Identity = 151/239 (63.18%), Postives = 182/239 (76.15%), Query Frame = 3 Query: 3 EIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 EIEE ++DE FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ DVNR C + TALHCAV+G + S E++K+LL ASA NCVDA GNKPVDL+ + + ++A+E+LL G H ++ EEEE +L T+ YP D SLPDIN GVYGTDDFRM++FK+KPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP RKG+CP+GD CEYA Sbjct: 48 EIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE------EELKSVVTK---YPADASLPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYA 277
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 3.790e-83 Identity = 145/237 (61.18%), Postives = 177/237 (74.68%), Query Frame = 3 Query: 3 EIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 E+EEKG D+DE WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK DVNRACG + T LHCAVAG + + EV+ +LL ASA VN VDA GN+P+D+ + R++A+ELLL+G +E V + +SK YP D SLPDIN GVYG+D+FRMY+FK+KPCSRAYSHDWTEC FVHPGENARRRDPRKYPYTCVPCP RKG+CP+GD CEYA Sbjct: 45 EVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSK-------YPADASLPDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYA 274
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 260.381 bits (664), Expect = 6.939e-69 Identity = 135/263 (51.33%), Postives = 167/263 (63.50%), Query Frame = 3 Query: 6 IEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP------------------------VPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 IE VDE WYGR+ GSK M + RTP+M+AA +GS+ V+K ++ DVNRACG+D TALHCA +GGA ++ +VVKLLL+A AD+N +DA G + D+I V K L K ++ LL D + E L N+P P K KKEYP+D SLPDI N +Y TD+FRMY+FK++PCSRAYSHDWTECPFVHPGENARRRDPRK+ Y+CVPCP RKGAC +GD CEYA Sbjct: 64 IERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPTGENGGSGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA 324
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 7.181e-66 Identity = 132/257 (51.36%), Postives = 161/257 (62.65%), Query Frame = 3 Query: 30 DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLL---KGDHTIF-------------------EEEELVNIPVPQLSKDG-------TEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 DE WYGRR E RTP+M+AA +GS+AVL+ ++ VDVNR CGSDG TALHCA +GG+ S E VKLLL+A AD + DA G +P D+I V K + K A++ LL K H + E+ + V +K +EKKEYP+D SLPDI N +Y +D+FRMY+FKI+PCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP RKG C +GD CEYA Sbjct: 95 DEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLLGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCRRGDMCEYA 344
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.225e-65 Identity = 123/259 (47.49%), Postives = 169/259 (65.25%), Query Frame = 3 Query: 27 VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE---------------------------ELVNIPVPQLSKDGT---EKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 +++ WY R+ ++M E+RTP+M+A+++GS+ V+K+++ + ++N +CG D TALHCA +G + +S +VVKLLLS AD N DA+GN+PVD++ V+ +P + +E +LK D I E+ + V+ P D T EKKEYPID SLPDI +G+Y TD+FRM++FKI+PCSRAYSHDWTECPF HPGENARRRDPRK+ YTCVPCP +KG+C QGD CEYA Sbjct: 64 INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISEDLHASSSSLGSSFRSLSSSPDNGSSLLSLDSVSSPTKPHGTDVTFASEKKEYPIDPSLPDIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCKQGDMCEYA 320
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.110e-58 Identity = 114/238 (47.90%), Postives = 150/238 (63.03%), Query Frame = 3 Query: 6 IEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRK-GACPQGDGCEYA 713 +EE+ + WYG G ++G E RT M+AA++GS VL YV+ + RA +DG T LH A AGGA ++ +LLL+A A V+ + A G + DL+P A + ++AI LLLK + P KKEYP D++LPD+ +G++ TD+FRMY+FK+KPCSRAYSHDWTECPFVHPGENARRRDPR+Y Y+CVPCP RK G+C +GD CEYA Sbjct: 44 VEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAA-----EKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYA 276
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.773e-56 Identity = 120/258 (46.51%), Postives = 153/258 (59.30%), Query Frame = 3 Query: 9 EEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN-IPVPQLSKDGTE--------------------KKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRK-GACPQGDGCEYA 713 EE D WYGR +E RTP+M+AA +GS V+ ++ G VDVNR G+DG TALHCA +GG++++ VVKLLL+A AD D+ G P D+I SP +E+LL + + + P LS E KKEYP+D +LPDI + VY +D+FRM+AFK++PCSRAYSHDWTECPFVHPGENARRRDPRK+PYT VPCP R+ G CP GD CE++ Sbjct: 48 EEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP--DALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFS 298
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.752e-48 Identity = 107/230 (46.52%), Postives = 139/230 (60.43%), Query Frame = 3 Query: 30 DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGA-CPQGDGCEYA 713 DEP+ WY + G E TP+M+AA++GSV L ++ VD NRA S T LH A AGG+ S+ V LL+A AD +D H ++RA +L+ +++ + L+++ +KE+P D SLPDI NG Y +DDFRMY+FK++ CSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP +KGA C +GD CEYA Sbjct: 39 DEPAPWY-----TPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLD------------------HLQRRASDLVALPPNSLPLKNHLLSLL--------GARKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYA 237
BLAST of FC929876 vs. ExPASy Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27 Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 3 Query: 438 LSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP*VRKGACPQGDGCEYA 713 LSK G Y ID S+P+I++ +YG+D+FRMYA+KIK C R SHDWTECP+ H GE A RRDPR+Y Y V CP R GAC +GD CE+A Sbjct: 25 LSKPGNAGA-YEIDPSIPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGACHRGDSCEFA 115 The following BLAST results are available for this feature:
BLAST of FC929876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929876 ID=FC929876; Name=FC929876; organism=Citrus clementina; type=EST; length=714bpback to top |