FC929882

Overview
NameFC929882
Unique NameFC929882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: ZB14_MAIZE (14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.641e-54
Identity = 105/129 (81.40%), Postives = 114/129 (88.37%), Query Frame = 2
Query:   26 MASEKEXXXXXVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            M+SEKE     +  DSPTIFDKII KEIPS VVYED+KVLAFRDI PQAPTHILIIPKVKDGLTGL+KAEERH EILG LLY AK+VAKQEGLEDG+R+VINDGP+G QSV+HIHVHLLGGRQMN PPG
Sbjct:    1 MSSEKEAALRRL-DDSPTIFDKIIKKEIPSTVVYEDEKVLAFRDINPQAPTHILIIPKVKDGLTGLAKAEERHIEILGYLLYVAKVVAKQEGLEDGYRVVINDGPSGCQSVYHIHVHLLGGRQMNWPPG 128          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: ZB14_BRAJU (14 kDa zinc-binding protein (Fragment) OS=Brassica juncea PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.757e-49
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII+KEIPS VVYEDDKVLAFRDI PQ P HIL+IPKV+DGLTGL KAEERH +ILGRLLYTAKLVAKQEGL++GFRIVINDGP G QSV+HIHVHL+GGRQMN PPG
Sbjct:    2 TIFGKIISKEIPSTVVYEDDKVLAFRDITPQGPVHILLIPKVRDGLTGLFKAEERHIDILGRLLYTAKLVAKQEGLDEGFRIVINDGPQGCQSVYHIHVHLIGGRQMNWPPG 113          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: Y1390_SYNE7 (Uncharacterized HIT-like protein Synpcc7942_1390 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1390 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.297e-32
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII +EIP+ +VYEDD  LAFRD+ PQAP HIL+IPK    +  L +A   H  +LG LL T K +A QEGL +G+R VIN GP GGQ+V+H+H+HLLGGR +  PPG
Sbjct:    5 TIFGKIIRREIPADIVYEDDLCLAFRDVAPQAPVHILVIPK--QPIANLLEATAEHQALLGHLLLTVKAIAAQEGLTEGYRTVINTGPAGGQTVYHLHIHLLGGRSLAWPPG 114          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT1_BOVIN (Histidine triad nucleotide-binding protein 1 OS=Bos taurus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.614e-31
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII KEIP+K++YEDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+H+H+H+LGGRQMN PPG
Sbjct:   17 TIFGKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKY--ISQISAAEDDDESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT2_HUMAN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Homo sapiens GN=HINT2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.026e-31
Identity = 61/114 (53.51%), Postives = 84/114 (73.68%), Query Frame = 2
Query:   71 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            +PTIF +I++K +P+ ++YED + L FRD+ PQAP H L+IPK    +  +S+AEE   ++LG LL  AK  AK EGL DG+R+VINDG  G QSV+H+H+H+LGGRQ+  PPG
Sbjct:   52 APTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKP--IPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT2_BOVIN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Bos taurus GN=HINT2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.026e-31
Identity = 61/114 (53.51%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   71 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            +PTIF +I+++ +P+ ++YED + LAFRD+ PQAP H L+IPK    +  +S+AEE   ++LG LL  AK  AK EGL DG+R+VINDG  G QSV+H+H+H+LGGRQ+  PPG
Sbjct:   52 APTIFSRILDRSLPADILYEDQQCLAFRDVAPQAPVHFLVIPKKP--IPRISQAEEEDQQLLGHLLLVAKETAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT1_RABIT (Histidine triad nucleotide-binding protein 1 OS=Oryctolagus cuniculus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.870e-31
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+H+H+H+LGGRQMN PPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT1_RAT (Histidine triad nucleotide-binding protein 1 OS=Rattus norvegicus GN=Hint1 PE=1 SV=5)

HSP 1 Score: 132.109 bits (331), Expect = 2.290e-30
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S A++    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+H+LGGRQMN PPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT1_MOUSE (Histidine triad nucleotide-binding protein 1 OS=Mus musculus GN=Hint1 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.290e-30
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   77 TIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S A++    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+H+LGGRQMN PPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
BLAST of FC929882 vs. ExPASy Swiss-Prot
Match: HINT2_MOUSE (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Mus musculus GN=Hint2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 57/114 (50.00%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   71 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNGPPG 412
            SPTIF +I+++ +P+ ++YED + L FRD+ PQAP H L+IP+    +  +S+AEE   ++LG LL  AK +A+ +GL+DG+R+V+NDG  G QSV+H+H+H+LGGRQ+  PPG
Sbjct:   52 SPTIFSRILDRSLPADILYEDQQCLVFRDVAPQAPVHFLVIPRKP--IPRISQAEEDDQQLLGHLLLVAKKIAQAQGLKDGYRLVVNDGKMGAQSVYHLHIHVLGGRQLQWPPG 163          
The following BLAST results are available for this feature:
BLAST of FC929882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ZB14_MAIZE8.641e-5481.4014 kDa zinc-binding protein OS=Zea mays GN=ZBP14 P... [more]
ZB14_BRAJU3.757e-4983.9314 kDa zinc-binding protein (Fragment) OS=Brassica... [more]
Y1390_SYNE79.297e-3258.04Uncharacterized HIT-like protein Synpcc7942_1390 O... [more]
HINT1_BOVIN4.614e-3156.25Histidine triad nucleotide-binding protein 1 OS=Bo... [more]
HINT2_HUMAN6.026e-3153.51Histidine triad nucleotide-binding protein 2, mito... [more]
HINT2_BOVIN6.026e-3153.51Histidine triad nucleotide-binding protein 2, mito... [more]
HINT1_RABIT7.870e-3155.36Histidine triad nucleotide-binding protein 1 OS=Or... [more]
HINT1_RAT2.290e-3055.36Histidine triad nucleotide-binding protein 1 OS=Ra... [more]
HINT1_MOUSE2.290e-3055.36Histidine triad nucleotide-binding protein 1 OS=Mu... [more]
HINT2_MOUSE2.991e-3050.00Histidine triad nucleotide-binding protein 2, mito... [more]

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Properties
Property NameValue
Genbank descriptionC34001E01EF PostHarvC1 Citrus clementina cDNA clone C34001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929882 ID=FC929882; Name=FC929882; organism=Citrus clementina; type=EST; length=631bp
GACGTATCATTTGTCTGCCGTCCTCATGGCTTCAGAGAAAGAGGCTGCTG
CTGCAGCCGTTCCTTCTGATTCGCCCACCATATTTGACAAAATAATTAAC
AAAGAAATCCCATCTAAAGTTGTTTATGAGGATGATAAGGTCTTAGCCTT
TAGGGACATAGAGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAG
TGAAGGATGGCTTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAA
ATTCTTGGCCGCCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGG
ACTAGAAGACGGCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTC
AATCAGTTTTTCACATCCACGTCCACCTCCTAGGAGGACGACAAATGAAC
GGGCCCCCGGGCTAAGATGAAGTATTTTGGGTGCCAGATTCTCTTATGAA
AAAATGATTACGCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACA
AATTACTTGGTGGTTGCTCTGAACCACATTATTTGATATGATGTGAAATG
ACATTGTGCTGGAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTG
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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