FC929886

Overview
NameFC929886
Unique NameFC929886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15060 contig Ccv1_Contig15060:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC2_MOUSE (MOSC domain-containing protein 2, mitochondrial OS=Mus musculus GN=Mosc2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 71/222 (31.98%), Postives = 110/222 (49.55%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAE---GAEASNWFTNYLGKPS-RLVRYNAESETRPV-----DPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW 664
            R+++    V  +++YPIKSC+G+SV +    T  G R     DR WMV+  +G     R EP+L LV   L N            +++ + APGM+ + + +  P   ++ +      G  +     G E + WFTNYL   + RLV+++   + R          Y    ++ + DC P  L+S+ SL  LN  LK+ + +  FRPNI+V GCE F ED W
Sbjct:   49 RQLQQVGTVSKVWIYPIKSCKGVSVCE-TECTDMGLRCGKVRDRFWMVVKEDGHMVTARQEPRLVLVSITLEN------------NYLTLEAPGMEQIVLPIKLPS--SNKIHNCRLFGLDIKGRDCGDEVAQWFTNYLKTQAYRLVQFDTSMKGRTTKKLYPSESYLQNYEVAYPDCSPVHLISEASLVDLNTRLKKKVKMEYFRPNIVVSGCEAFEEDTW 255          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC2_RAT (MOSC domain-containing protein 2, mitochondrial OS=Rattus norvegicus GN=Mosc2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 73/225 (32.44%), Postives = 111/225 (49.33%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQ--ALKISLSKPRDIAD----GVSVWEWCGSALAEGAEASNWFTNYLGKPS-RLVRYNAESETRPV-----DPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW 664
            R+++    V  +++YPIKSC+G+SV +    T  G R     DR WMV+  +G     R EP+L LV   L N            +++++ APGM+   L I L     I D    G+ +          G E + WFT+YL   + RLV+++ + + R          Y    ++ + DC P  L+S+ SL  LN  L++ + +  FRPNI+V GCE F ED W
Sbjct:   49 RQLQQVGTVSKVWIYPIKSCKGVSVCE-TECTDMGLRCGKVRDRFWMVVKEDGHMITARQEPRLVLVTITLEN------------NYLMLEAPGMEPIVLPIKLPSSNKIHDCRLFGLDI-----KGRDCGDEVARWFTSYLKTQAYRLVQFDTKMKGRTTKKLYPSESYLQNYEVAYPDCSPIHLISEASLVDLNTRLQKKVKMEYFRPNIVVSGCEAFEEDTW 255          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC2_BOVIN (MOSC domain-containing protein 2, mitochondrial OS=Bos taurus GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24
Identity = 74/224 (33.04%), Postives = 112/224 (50.00%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKI-----SLSKPRDI-ADGVSVW-EWCGSALAEGAEASNWFTNYLGKPS-RLVRYNAESETRP---VDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW 664
            R+++    V  +++YPIKSC+G+SV   A  T  G R     DR W+VI  +G     R EP+L LV     ++             +++RAPGM  L +     S +K  D    G+ +    CG       EA+ WFT++L   + RLV++    + R    + P      ++ + DC P M+LS+ SL  LN  +++ + IN FRPNI+V GC  F ED W
Sbjct:   49 RRLQQVGTVSELWIYPIKSCKGVSVDA-AECTALGLRSGHLRDRFWLVIKEDGHMVTGRQEPQLVLVSITYEDDC------------LILRAPGMDQLVLPTKLLSSNKLHDCRVFGLDIQGRDCGD------EAAQWFTSFLKTDAFRLVQFEKNMKARASNEIFPSLDKNYQVAYPDCSPVMILSEASLADLNTRMEKKVKINNFRPNIVVTGCSAFEEDTW 253          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC1_HUMAN (MOSC domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MOSC1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 69/219 (31.51%), Postives = 105/219 (47.95%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYL-GKPSRLVRYNAESETRPVDPKYAAG-----EKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW 664
            R ++    V  +++YP+KSC+G+ VS+ A  T  G R     DR W+VIN  G     R EP+L L+      +        T    + I+ P   A+        +I         CG A A+      W T++L  +P RLV +  E   RP  P   A      ++I +SD  PF++LS+ SL  LN  L++ +    FRPNI++ GC+ ++ED W
Sbjct:   50 RLLQQVGTVAQLWIYPVKSCKGVPVSE-AECTAMGLRSGNLRDRFWLVINQEGNMVTARQEPRLVLISLTCDGDTLTLSAAYTKDLLLPIKTPTTNAVHKCRVHGLEIEG-----RDCGEATAQ------WITSFLKSQPYRLVHF--EPHMRPRRPHQIADLFRPKDQIAYSDTSPFLILSEASLADLNSRLEKKVKATNFRPNIVISGCDVYAEDSW 254          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC1_XENLA (MOSC domain-containing protein 1, mitochondrial OS=Xenopus laevis GN=mosc1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 63/218 (28.90%), Postives = 104/218 (47.71%), Query Frame = 2
Query:   62 VKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYL--GKPSRLVRYNAE----SETRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRI 679
            V  + +YP+KSCR + V Q+A  +  G +     DR W+V+   G     R EP++ L+                    + +  P MQ ++I L  P+   + D   V+         G +AS W   Y    +P RLV + A+     +++  +  +   + I + D  P MLLS+ S++ALN  L++P+ +  FRP I+  GCE F+ED W  +R+
Sbjct:   60 VSQLLIYPVKSCRAVPV-QEAECSALGLKSGHLEDRHWLVVTEEGNMVTARQEPRMVLISATFCGNT------------LCLNGPEMQEVQIPLPLPKSNRVLD-CRVFGQDIQGRDSGEQASEWLATYFQSSQPYRLVHFEADVMRPRQSKKKEKLFRDKDVIAYPDASPIMLLSETSMEALNSRLEQPVSLANFRPCIVASGCEAFAEDDWDDVRL 263          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC1_MOUSE (MOSC domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mosc1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/222 (29.73%), Postives = 107/222 (48.20%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPS-RLVRYNAE---SETRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRI 679
            R+++    V  +++YPIKSC+G+SVS +A  T  G R+    DR W+VIN  G     R EP+L L+     ++        T    + I  P    L         +   V   E  G     G +A+ W +++L   S RLV +        +R +   +   +++ +SD  PF++LS+ SL+ LN  L+  +    FRPNI++ GC  ++ED W  + I
Sbjct:   53 RRLQQVGTVAQLWIYPIKSCKGLSVS-EAECTAMGLRYGHLRDRFWLVINEEGNMVTARQEPRLVLISLTCEDDTLTLSAAYTKDLLLPITPPATNPL---------LQCRVHGLEIQGRDC--GEDAAQWVSSFLKMQSCRLVHFEPHMRPRSSRQMKAVFRTKDQVAYSDASPFLVLSEASLEDLNSRLERRVKATNFRPNIVISGCGVYAEDSWNEVLI 262          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC2_HUMAN (MOSC domain-containing protein 2, mitochondrial OS=Homo sapiens GN=MOSC2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 63/218 (28.90%), Postives = 106/218 (48.62%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPR-DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPS-RLVRYNAESE---TRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW 664
            R+++    V  +++YP+KSC+G+ VS+ A  T  G R     DR W+VI  +G     R EP+L L+     N              ++ RAP M  L +   +P  +      ++         G EA+ WFTN+L   + RLV++    +   +R + P      ++ + D  P ++++  SL  LN  +++ + +  FRPNI+V GC+ F ED W
Sbjct:   49 RRLQQVGTVAKLWIYPVKSCKGVPVSE-AECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYENNC------------LIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLVQFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNIVVTGCDAFEEDTW 253          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC2_MACFA (MOSC domain-containing protein 2, mitochondrial OS=Macaca fascicularis GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 63/218 (28.90%), Postives = 106/218 (48.62%), Query Frame = 2
Query:   38 RKMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPR-DIADGVSVWEWCGSALAEGAEASNWFTNYLG-KPSRLVRYNAESE---TRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW 664
            R+++    V  +++YP+KSC+G+ VS+ A  T  G R     DR  +VI  +G     R EP+L LV     N              ++ +AP M  L +   +P  +      ++         G EA+ WFTN+L  +  RLV++    +   +R + P      ++ + DC P ++++  SL  LN  +++ + +  FRPNI+V GC+ F ED W
Sbjct:   49 RRLQQVGTVAKLWIYPVKSCKGVPVSE-AECTAMGLRSGNLRDRFLLVIKEDGHIVTARQEPRLVLVSITYENNC------------LIFKAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAQWFTNFLKTEVYRLVQFETNMKGRTSRKLLPTLDQNYQVAYPDCSPLLIMTDASLVDLNTRIEKKMKMENFRPNIVVTGCDAFEEDTW 253          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOSC1_DANRE (MOSC domain-containing protein 1, mitochondrial OS=Danio rerio GN=mosc1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 66/222 (29.73%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   41 KMEAAAKVKSIFVYPIKSCRGISVSQQAPLTPTGFRW----DRQWMVINNNGRAYAQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYL--GKPSRLVRYNAESET-RP--VDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRI 679
            K+     V  + V+P+KS + +SV + A     G ++    DR W+VI  +G     R +P+L LV          EG        + +  P M+ LK  L+   D+     V+         G + S W T +L   KP RLV Y  + +  RP   +P +   +++ + D  P ML+++ S+  LN  L + + + +FRP+I+V  CE F+ED W  IRI
Sbjct:   43 KLTRVGVVTKLLVHPLKSGKAVSV-EAAECLRMGLKYGELRDRHWLVITEDGHMVTGRQQPRLVLVSLTC------EG------GHVSLNGPQMEELKFPLNNSSDLVVDCRVFSVDVQGRDCGDKVSEWLTRFLEADKPVRLVHYEPDLKPQRPHEKEPLFPKDDEVAYPDAAPVMLMTEASVGDLNSRLDKDLSVFQFRPSIVVSDCEAFTEDTWDHIRI 251          
BLAST of FC929886 vs. ExPASy Swiss-Prot
Match: MOCOS_ORYSJ (Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 71/230 (30.87%), Postives = 111/230 (48.26%), Query Frame = 2
Query:   62 VKSIFVYPIKSCRGISVSQQAPLTPTGFRWDRQWMVINNNGRAYAQRNEPKLALVETELPNEA---FLEGWEPTGRSFMVIRAPGMQALKISLSKP-RDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVR-----YNAESETRPVD-PKYAAGEKIMFSDCYPFMLLSQGSLDALNKLL---------KEPIPINRFRPNILVDGCEPFSEDLWMGIRINIAHF 694
            +KSI +YP+KSC+G SV    PLT  G  +DR+W++  + G    Q+  P+L  + T +  E    F+E   PT R            L++SL +   D+++ V V+       +     + WF+  +G+P  LVR     Y + + T   D P      K+ F +    +L+S+ S+  LN  L         K P+   RFRPN+++ G  P+SED W  +RI  A F
Sbjct:  532 LKSIIIYPVKSCQGFSVKSW-PLTTGGLMYDREWLLQGSGGEILTQKKVPELGSIRTLIDLELGKLFIES--PTRRD----------KLQLSLLESLADLSEEVDVFGQRYEVQSYDDRVNTWFSEAIGRPCTLVRCSSSKYRSCTYTGLRDRPCRDTQSKLNFVNEGQLLLISEESISDLNSRLNSGKGDCKQKLPVDAMRFRPNLVISGSSPYSEDNWKKLRIGEACF 748          
The following BLAST results are available for this feature:
BLAST of FC929886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
MOSC2_MOUSE4.536e-2531.98MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC2_RAT2.251e-2432.44MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC2_BOVIN8.555e-2433.04MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_HUMAN1.784e-2131.51MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC1_XENLA8.853e-2128.90MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC1_MOUSE1.156e-2029.73MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_HUMAN1.972e-2028.90MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC2_MACFA4.394e-2028.90MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_DANRE4.858e-1929.73MOSC domain-containing protein 1, mitochondrial OS... [more]
MOCOS_ORYSJ1.846e-1830.87Molybdenum cofactor sulfurase OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001E05EF PostHarvC1 Citrus clementina cDNA clone C34001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929886 ID=FC929886; Name=FC929886; organism=Citrus clementina; type=EST; length=696bp
GGACGATCGAGCAAAGGAAAACTCGTGAGAGCTACTGAGAAAAATGGAGG
CTGCAGCCAAAGTAAAATCAATATTTGTATACCCAATTAAATCATGCAGA
GGCATCTCTGTCTCTCAGCAGGCACCCCTCACTCCTACTGGATTTCGATG
GGATAGACAGTGGATGGTAATTAATAACAACGGGAGAGCATATGCTCAGA
GAAACGAGCCAAAGCTTGCTCTGGTTGAGACAGAGTTGCCAAATGAGGCA
TTTTTAGAAGGATGGGAACCCACTGGGAGATCATTCATGGTAATAAGAGC
TCCAGGGATGCAGGCTCTTAAAATTTCACTGAGCAAACCCCGTGATATAG
CAGACGGTGTTTCCGTATGGGAGTGGTGTGGCTCTGCACTGGCTGAGGGA
GCTGAAGCTTCAAATTGGTTTACAAATTACCTTGGGAAACCTAGTCGGCT
AGTTCGTTACAATGCAGAATCAGAAACTAGACCTGTCGATCCCAAATATG
CTGCTGGAGAGAAAATAATGTTTTCTGATTGTTATCCATTTATGCTGTTG
TCTCAGGGATCTTTGGATGCACTTAATAAGCTTCTCAAGGAGCCTATTCC
AATTAACCGTTTTCGACCAAACATCCTTGTTGATGGTTGTGAACCGTTTT
CTGAGGACTTATGGATGGGCATCCGAATAAACATTGCACATTTCAA
back to top