FC929888

Overview
NameFC929888
Unique NameFC929888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.855e-87
Identity = 160/178 (89.89%), Postives = 174/178 (97.75%), Query Frame = 1
Query:  157 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            KNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGVSLVEDI RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV HIKKDS+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMASRIA
Sbjct:   16 KNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGVSLVEDIFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIA 193          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 256.529 bits (654), Expect = 9.571e-68
Identity = 125/179 (69.83%), Postives = 155/179 (86.59%), Query Frame = 1
Query:  157 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRIA 690
            K F+QISR+RLL+EML S KTG SK+ WK+LIMD++TVK+MS SCKMADIT +G+SLVE++ +RR+P+P M+AIYFIQP+KEN++MFLSDMSGR PLY+KAF+FFSS I +ELV HIK DS+VLPRIGALREMN+EYF ID+QGF+TD E+ALE L+  D ENSR    CLN+MA+RIA
Sbjct:   19 KFFRQISRDRLLHEMLGSTKTGDSKA-WKILIMDRVTVKVMSQSCKMADITDQGISLVEELFKRREPMPGMDAIYFIQPSKENIVMFLSDMSGREPLYRKAFIFFSSTIPKELVNHIKSDSSVLPRIGALREMNMEYFPIDNQGFLTDHEQALETLYAEDAENSRHFHICLNIMATRIA 196          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.058e-66
Identity = 128/179 (71.51%), Postives = 154/179 (86.03%), Query Frame = 1
Query:  157 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE-ENSRRGDACLNVMASRIA 690
            ++F+QI+R+RLL+EMLRS K  +SKS WKVLIMDKLTVKIMS SCKMAD+ +EGVSLVED++ RRQPLP M+AIYFIQPTKEN+ +F+SDMSG+ PLYKKA+VFFSSP+ RELV  IKKDS V  RIGAL EMNLEYFAIDSQGF TD ++ALEELF +  E S + ++CLN+MA+RIA
Sbjct:   16 RSFRQITRDRLLFEMLRSTKK-SSKSAWKVLIMDKLTVKIMSFSCKMADVMEEGVSLVEDLYMRRQPLPLMDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGALSEMNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIA 193          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.528e-65
Identity = 123/178 (69.10%), Postives = 148/178 (83.15%), Query Frame = 1
Query:  157 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            KNF+QI+RERLL EMLR  + G+SK TWKVL+MDK TVKIMS +CKM++ITQ G+SLVE I + RQP+ +ME IYFIQPT+ENV  FLSDM+G+SPLYKKAFVFFSSP+SR LV  IKKD   + RIG L+EMNLEY ++D QGFVT++E ALEELF D+EN +R DACLNV+A RIA
Sbjct:   16 KNFRQITRERLLCEMLRPERNGSSKLTWKVLVMDKFTVKIMSSACKMSEITQGGISLVEVITKHRQPMTAMEVIYFIQPTEENVTAFLSDMTGKSPLYKKAFVFFSSPVSRSLVNVIKKDMRAMKRIGGLKEMNLEYISMDIQGFVTNNENALEELFCDDENHQRADACLNVVAKRIA 193          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.253e-59
Identity = 108/178 (60.67%), Postives = 147/178 (82.58%), Query Frame = 1
Query:  157 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K F+ I R+R+L ++L+  K   +KS+WKVLIMDK TV+IM+++CKMA+IT  G+SLVED+ +RR+P+PSM+AIYF+QP KENVIM LSDMSGR PLY+KA++FFSSPI +ELV++IK DS+V+PRIGALREMNLE+FAID QGF TD + A  +L+  + NS++ +  ++ MA+RIA
Sbjct:   16 KIFRNICRDRILKDLLQPDKDKETKSSWKVLIMDKFTVRIMAYACKMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKENVIMLLSDMSGRCPLYRKAYIFFSSPIPKELVSYIKNDSSVIPRIGALREMNLEFFAIDMQGFTTDHDMAFTDLYSAQHNSKKFNDTISTMATRIA 193          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: UNC18_CAEEL (Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans GN=unc-18 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 1
Query:  184 RLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTD 600
            +LL +++R  K G  +S W VLI+D L ++++S  CKM +I +EG+++VED+++RR+PLP++EAIY I PT E++   + D   R+ LYK A VFF+   S +L + + K S     I  L+E+N+ +   +SQ F  D
Sbjct:   92 KLLNDVIRPLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVEDLNKRREPLPTLEAIYLIAPTAESIDKLIQDYCARN-LYKCAHVFFTEACSDQLFSTLSK-SAAARFIKTLKEINIAFTPYESQVFNLD 228          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB2_RAT (Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 61/176 (34.66%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VEDI++RR+P+PS+EAIY + PT+++V   ++D  G     YK A +FF+      L + + + S +   +  L+E++L +   ++Q F  D   +   L+       RG   L+V+A +IA
Sbjct:    7 KAVVVEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFQGTPTFTYKAAHIFFTDTCPEPLFSELGR-SRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAGERGRQ-LDVLAQQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB2_MOUSE (Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 60/176 (34.09%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIA 690
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VEDI++RR+P+PS+EAIY + PT+++V   ++D  G     YK A +FF+      L + + + S +   +  L+E++L +   ++Q F  D   +   L+       RG   L+ +A +IA
Sbjct:    7 KAVVGEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFQGTPTFTYKAAHIFFTDTCPEPLFSELGR-SRLAKAVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAGERGRQ-LDALAQQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB2_HUMAN (Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 63/179 (35.20%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEEL---FGDEENSRRGDACLNVMASRIA 690
            K +  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VEDI++RR+P+PS+EAIY + PT+++V   + D  G     YK A +FF+      L + + + S +   +  L+E++L +   ++Q F  D   +   L   F  EE +R+    L V+A +IA
Sbjct:    7 KAVVGEKILSGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIKDFQGTPTFTYKAAHIFFTDTCPEPLFSELGR-SRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAEERTRQ----LEVLAQQIA 177          
BLAST of FC929888 vs. ExPASy Swiss-Prot
Match: STXB2_CANFA (Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 55/155 (35.48%), Postives = 94/155 (60.65%), Query Frame = 1
Query:  166 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPL-YKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELF 627
            K++  E++L  ++RS K       WKVLIMD  +++I+S  CKM+DI  EG+++VEDI++RR+P+PS+EAIY + PT+++V   ++D  G     YK A +FF+      L T + + S +   +  L+E++L +   ++Q F  D   +   L+
Sbjct:    7 KEVVGEKILNGVIRSVK---KDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFRGTPTFTYKAAHIFFTDTCPEPLFTELSR-SRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLY 157          
The following BLAST results are available for this feature:
BLAST of FC929888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
KEULE_ARATH1.855e-8789.89SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1A_ARATH9.571e-6869.83Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1A_ORYSJ1.058e-6671.51Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ARATH1.528e-6569.10Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1B_ORYSJ1.253e-5960.67Probable protein transport Sec1b OS=Oryza sativa s... [more]
UNC18_CAEEL3.223e-2340.29Putative acetylcholine regulator unc-18 OS=Caenorh... [more]
STXB2_RAT3.564e-2234.66Syntaxin-binding protein 2 OS=Rattus norvegicus GN... [more]
STXB2_MOUSE4.655e-2234.09Syntaxin-binding protein 2 OS=Mus musculus GN=Stxb... [more]
STXB2_HUMAN4.655e-2235.20Syntaxin-binding protein 2 OS=Homo sapiens GN=STXB... [more]
STXB2_CANFA6.079e-2235.48Syntaxin-binding protein 2 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34001E07EF PostHarvC1 Citrus clementina cDNA clone C34001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929888 ID=FC929888; Name=FC929888; organism=Citrus clementina; type=EST; length=692bp
GTTTGCTAAAGTCTAAACTCCTTCTGCCTGTCTGCTTTGATCAGCACGCC
ATCTCTCTGTCTTCGCAACTCGTCCTCTTTTTTGGATCCATCGATTAACT
GTAAAAACGACATGTCGTACTCCGATTCGGACTCCTCTTCCTACGGCGGC
GACTACAAAAACTTTAAGCAAATCAGCCGCGAAAGATTGTTGTATGAAAT
GCTTCGCTCAGCAAAAACAGGGACCTCGAAATCTACATGGAAGGTACTCA
TCATGGATAAACTTACCGTTAAGATAATGTCTCATTCGTGCAAGATGGCT
GACATCACACAGGAAGGAGTTTCATTGGTAGAAGACATACACAGACGAAG
GCAGCCATTGCCCTCCATGGAGGCTATATACTTCATTCAACCAACCAAAG
AGAATGTTATCATGTTCTTGTCAGATATGTCCGGAAGATCGCCTTTATAT
AAGAAGGCATTTGTTTTCTTCAGTTCACCTATATCAAGGGAACTGGTGAC
TCACATCAAGAAGGATTCAACTGTTCTACCTCGCATAGGTGCACTAAGAG
AGATGAATTTGGAGTATTTTGCAATAGACAGCCAGGGCTTTGTCACTGAT
GATGAAAGGGCCTTGGAGGAACTCTTTGGAGATGAGGAAAATTCTCGCAG
AGGTGATGCGTGTTTGAATGTGATGGCTTCCCGCATTGCTAC
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