FC929894

Overview
NameFC929894
Unique NameFC929894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929894_ssr178 microsatellite FC929894_ssr178:178..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12851 contig Ccv1_Contig12851:658..1363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.441e-66
Identity = 131/213 (61.50%), Postives = 157/213 (73.71%), Query Frame = 1
Query:   97 MSDEHKHEEPAG-----------ESVMEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCIS*LVL 693
            M+DEHKHEE +            ES+MEK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WVLF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LREIASGRD+KKFLS IAGLWV+SI+G  C S L L
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGG-CYSFLTL 212          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.882e-66
Identity = 132/217 (60.83%), Postives = 159/217 (73.27%), Query Frame = 1
Query:   97 MSDEHKHEE------PA-----GESVMEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCIS*LVL 693
            M++EHKH+E      PA      ES+M+KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDLKKFL  IAGLWV+SI+G  C + L L
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGG-CFNFLTL 216          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.220e-65
Identity = 128/193 (66.32%), Postives = 150/193 (77.72%), Query Frame = 1
Query:   97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWC 675
            M++EHKHEE    S+MEKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+LF+LLEY+LLTL  H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VIAGLWV+S VGS C
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSC 186          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64
Identity = 125/200 (62.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query:   97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCIS*LVL 693
            M ++HKHEE    S++EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ VIAGLWV+SI+GS C + L L
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS-CYNFLTL 195          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61
Identity = 113/192 (58.85%), Postives = 144/192 (75.00%), Query Frame = 1
Query:   97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672
            M++E +   P  ES+MEKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNW 189          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.965e-59
Identity = 114/192 (59.38%), Postives = 140/192 (72.92%), Query Frame = 1
Query:   97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672
            M++E +      ES+MEKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNW 189          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 75/145 (51.72%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  238 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+LF      LLT +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNW 188          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 72/140 (51.43%), Postives = 102/140 (72.86%), Query Frame = 1
Query:  256 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWC 675
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWVLF+ + +H L+LVC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS C
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCC 183          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 55/142 (38.73%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  247 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L ++A GRD   F      L++VSI+G++
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTY 160          
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 48/138 (34.78%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  256 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGS 669
            +LF R++ +H++LGGG  ADV LWR K +S G++    A W++F+   Y + TL+   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGS 144          
The following BLAST results are available for this feature:
BLAST of FC929894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLB_ARATH1.441e-6661.50Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.882e-6660.83Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.220e-6566.32Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.033e-6462.50Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH9.048e-6158.85Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH4.965e-5959.38Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH8.804e-4051.72Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.169e-3851.43Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH7.731e-2838.73Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH1.155e-2334.78Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34001F01EF PostHarvC1 Citrus clementina cDNA clone C34001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929894 ID=FC929894; Name=FC929894; organism=Citrus clementina; type=EST; length=706bp
GAGTTATTACTTCGTTGAGAGTTGGCGAGCTTCTTTCATTTCTCAAAGTT
AAAAAGGTTTGAAAACACCGAGTGAGGGATTTGTACAGAGAGCGCGATGT
CTGACGAGCATAAACACGAGGAACCAGCCGGTGAATCGGTGATGGAGAAG
ATAACGGAGAAGATCCACGGCCACGATTCGTCGTCGTCGTCATCGTCATC
TGACACCGATGATGATAAGAAGTCATCTACATCCTCCCTCAAGACCAAAG
TATTTCGTCTCTTCGGAAGAGAAAAGCCTGTTCACAAGGTTCTTGGTGGC
GGAAAACCTGCGGATGTTTTCTTATGGAGGAACAAGAAGATTTCAGCAGG
AGTACTTGGTGGGGCTACTGCAATATGGGTTCTGTTTCAATTGCTTGAGT
ACCACCTTCTAACTCTTGTCTGTCACTGCCTGATTGTTGCACTTGCGGTG
CTTTTCTTGTGGTCTAATGCTTCCACCTTCATTAACAAGTCTCCACCACG
CATTCCGGAAGTATATATCCCTGAGGAACCAGTTTTACAGTTGGCCTCTG
CACTTAGGTTTGAGATCAATAGGGCCTTCACTCTTCTGAGGGAAATAGCA
TCTGGAAGAGATCTGAAGAAGTTTCTCTCGGTGATTGCTGGCTTGTGGGT
TGTGTCGATTGTGGGGAGCTGGTGCATTTCTTGACTTGTTCTAATAGNTT
TTGTAC
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