FC929896

Overview
NameFC929896
Unique NameFC929896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig724 contig Ccv1_Contig724:90..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929896 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  229 CLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKGCQYFLD 705
            C+ RYL A  W+V  AKK + +TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K    F+D
Sbjct:  637 CILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFID 794          
BLAST of FC929896 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 67/176 (38.07%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  214 YCSDACLKRYLEARNWNVDKAKKMLEETLKWRS----TYRPEE---IRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKGCQYFLD 705
            + S  C  RYL A  WN   A K L +TL WR     T+  E+   +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K    FLD
Sbjct:   89 WLSRECFLRYLRANKWNTANAIKGLTKTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLD 263          
BLAST of FC929896 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  190 PLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTY--------RPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKGCQYFLD 705
            PL      + +  C  RYL A  W +      +  TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K    F+D
Sbjct:   76 PLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFID 261          
BLAST of FC929896 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 55/186 (29.57%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  166 KELKAAIGPLYGRS-LQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIR-WNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAI--LNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKGCQYFLD 705
            KE+K+    L   + + +C+D C  RYL ARN+ V K++KML +TL+WR  +RP++I+   +I   G  G ++     D+ GR ++   P      ++ +++  ++LVY +E     ++ P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK    FL+
Sbjct:   53 KEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLN 236          
BLAST of FC929896 vs. ExPASy Swiss-Prot
Match: CSR1_ASHGO (Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii GN=CSR1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 55/197 (27.92%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  163 VKELKAAIGPLYGRSLQYCS--DACLKRYLEARNWNVDKAKKMLEETLKWR-STYRPEEIRW-----------NEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTA--SIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKGCQYFLD 705
            +KEL  A       S+  C   D  L R++ AR W+++KA  M+  +L+WR +  +PE+I +             I  + E GK    GF D++G  ++ +RP + + A  +      + +++IE A L L E  +    L D +G+S++ ++     +  I   + HYPE L   F++  P IF   W   + +LD
Sbjct:  116 LKELDGAAVSKEFWSMLRCDYPDNLLLRFVRARKWDINKAMIMMAHSLRWRLNEGKPEDIVFGGERGAQKADKKGIVKQLELGKATVRGF-DKNGCPIVYVRPRLHHAADQTEAETSEYSLFIIEQARLFLKEPCDTATILFDLSGFSMA-NMDYAPVKFLITCFEAHYPECLGKLFIHKAPWIFPPIWNIIKNWLD 310          
The following BLAST results are available for this feature:
BLAST of FC929896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YJX4_SCHPO7.518e-2339.62CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR17_YEAST4.125e-2138.07Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
PDR16_YEAST4.561e-2033.69Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
RSC5_DICDI3.861e-1929.57Random slug protein 5 OS=Dictyostelium discoideum ... [more]
CSR1_ASHGO6.601e-1127.92Phosphatidylinositol transfer protein CSR1 OS=Ashb... [more]
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Properties
Property NameValue
Genbank descriptionC34001F03EF PostHarvC1 Citrus clementina cDNA clone C34001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929896 ID=FC929896; Name=FC929896; organism=Citrus clementina; type=EST; length=713bp
GAACTCCATCTTCTTCAAAATCAGATTCATAGACAAAGCATCACCACGGT
GTTTCTATCTCCTTCTCCAGGTTGACTCGATTGCTAAATTGTGGGATCAG
TCGCCATGTTTCGCAAGAAGAATAACACTCAGGAGAGTGAGGAGCACCAT
CATGAGTCAAAGGTCAAGGAGCTTAAGGCTGCAATTGGACCACTTTATGG
ACGTAGTTTGCAGTACTGCTCTGATGCATGCTTGAAGAGATATCTGGAGG
CTCGAAACTGGAATGTGGACAAAGCAAAGAAAATGTTGGAAGAGACACTC
AAATGGAGGTCAACCTACAGGCCGGAGGAAATCCGTTGGAATGAAATTGC
AGTTGAAGGTGAGACCGGAAAGTTATTTAGAGCTGGTTTTCATGACCGAC
ATGGCAGGACTGTTCTCATATTGAGACCCGGAATGCAGAACACTGCATCA
ATAGACAATCAGATGAGACACCTAGTCTATCTCATAGAGAATGCTATCCT
AAACCTTCCAGAGGGTCAGGAACAAATGGCATGGTTAATAGACTTCACTG
GGTGGTCATTGAGCACCAGCGTCCCCATCAGGTCTGCCCGAGAAACTATC
AATATATTACAAAATCACTACCCTGAAAGGCTGGCCATAGCATTTCTCTA
CAATCCCCCACGGATTTTTGAAGCATTTTGGAAGGGTTGTCAGTATTTCT
TGGATGCCAAACA
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