FC929901

Overview
NameFC929901
Unique NameFC929901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929901 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGG 689
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGG 242
[Close]
BLAST of FC929901 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGG 689
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGG 235
The following BLAST results are available for this feature:
BLAST of FC929901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE4.364e-1534.06Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN5.699e-1533.33Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC34001F08EF PostHarvC1 Citrus clementina cDNA clone C34001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929901 ID=FC929901; Name=FC929901; organism=Citrus clementina; type=EST; length=706bp
GGAACAAGAAGCTAGCTACATCCTTTGATCCTTTCTCCTTGAGCTCCCAA
AAAATTGCCATTACTATTTCTTCCCAATGCACTAACTTGGGCTCCTTTTG
CATACTCTTTAAACTAGTCCCATTTGCAGATAATTTTTTTTTTTGGCCTC
ATTTCAGAATGGTTGCTGCAAGAATGGGCCAATGGTTGAATCTTTTAGTA
TGTGCACTCATATTACTGAAAGCTGACGGCTTTAATGTAGGAATCACTTA
TGTTGAGAATGCTGTAGCGAAAGGAGCTGTTTGTTTGGATGGTAGCCCGC
CTGCTTACCATTTTGATAAGGGGTTTGGTGCTGGGATCAATAATTGGTTG
GTTCACATTGAGGGAGGAGGATGGTGCAACAATGTCACAACTTGTCTTGA
ACGTAAGAAAACCCGTTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTTG
CTTTCTCTGGGATGCTGAGCAACAAGCAAAAATTTAACCCAGACTTCTAC
AATTGGAATAGAATCAAGGTTAGATACTGTGATGGTGCATCGTTTACTGG
AGATGTGGAGGCTGTCAATCCAGCAAATAACCTTCACTTCAGAGGAGCAA
GGGTTTTTCAAGCTGTCATGGAGGATCTAATGGCTAAAGGGATGAAAAAT
GCTCAAAATGCTGTTCTTTCTGGCTGCTCAGCTGGGGGGTTGACTTCATT
TTGCAT
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