FC929914

Overview
NameFC929914
Unique NameFC929914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929914_ssr118 microsatellite FC929914_ssr118:118..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8940 contig Ccv1_Contig8940:79..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929914 vs. ExPASy Swiss-Prot
Match: YQJG_ECOLI (Uncharacterized protein yqjG OS=Escherichia coli (strain K12) GN=yqjG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 48/111 (43.24%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  351 HLYVGLPCPWAHRTLIVRALKGLEDAVPVSIAGPGQ-DGSWEFTNNRNPSRDKDIPVPGLDNENGCKN--LKEVYKLRKGGYSGRATVPMLWDVDNKDVACNESYDIIQFF 674
            HLYV L CPWAHRTLI+R LKGLE  + VS+  P   +  W F          D   PG   +   +N  L ++Y      YSGR TVP+LWD  N  +  NES +II+ F
Sbjct:   56 HLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTF----------DDSFPGATGDTLYQNEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMF 156          
BLAST of FC929914 vs. ExPASy Swiss-Prot
Match: GTO2_SCHPO (Glutathione S-transferase omega-like 2 OS=Schizosaccharomyces pombe GN=gto2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 53/142 (37.32%), Postives = 67/142 (47.18%), Query Frame = 3
Query:  273 SDSSGSYTRPASKFFLINNP------PSTANLHLYVGLPCPWAHRTLIVRALKGLEDAVPVSIAG--PGQDGSWEFTNNRNPSRDKDIPVPGLDNENGCKNLKEVYKLRKGGYSGRATVPMLWDVDNKDVACNESYDIIQFF 674
            S   G + R  S F    +P      P     HLYV   CPWAHRTLIVR LKGLE+ +PV + G   G +G W F    + + D     P L N         +Y      Y+ R TVP+LWD     +  NES +II+ F
Sbjct:   10 SSKDGEFRRQVSSFRERISPEHKYFQPEKDRYHLYVSYACPWAHRTLIVRKLKGLENVIPVHVVGWLMGPNG-WNFDKENDSTGDPLYNSPYLRN---------LYFRADPNYNMRFTVPVLWDSKYNTIVNNESAEIIRMF 141          
BLAST of FC929914 vs. ExPASy Swiss-Prot
Match: GTO3_YEAST (Glutathione S-transferase omega-like 3 OS=Saccharomyces cerevisiae GN=GTO3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 60/174 (34.48%), Postives = 80/174 (45.98%), Query Frame = 3
Query:  255 MSQLAPSDSSGSYTRPASKFFLI---NNP---PSTANLHLYVGLPCPWAHRTLIVRALKGLEDAVPVSIA-GPGQDGSWEF-------TNNRN----------------------PSRDKDIPVPGLDNEN-GCKNLKEVYKLRKGGYSGRATVPMLWDVDNKDVACNESYDII 665
            MS+ + S++   + R +S F  I   ++P   P+     LYV LPCPWA RTLI RALKGL   +  S+A     D  W F       TN R+                      P+    + V G D  + G K L + Y   K  Y GR TVP+LWD++   +  NES DII
Sbjct:    1 MSEKSASNNKAEFKRQSSPFREIISADHPIYKPAKGRYWLYVALPCPWAQRTLITRALKGLAPIIGCSVAHWHLDDKGWRFLEEGDGKTNERHWFDIAGGISSVNLNTSTPVANIPNNAHRLLVDGTDEPHYGYKRLSDFYFKTKPDYKGRFTVPVLWDLETCTIVNNESSDII 174          
The following BLAST results are available for this feature:
BLAST of FC929914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YQJG_ECOLI9.046e-1643.24Uncharacterized protein yqjG OS=Escherichia coli (... [more]
GTO2_SCHPO7.658e-1537.32Glutathione S-transferase omega-like 2 OS=Schizosa... [more]
GTO3_YEAST2.910e-1434.48Glutathione S-transferase omega-like 3 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionC34001G09EF PostHarvC1 Citrus clementina cDNA clone C34001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929914 ID=FC929914; Name=FC929914; organism=Citrus clementina; type=EST; length=719bp
GCACTTCATCACATCTTAGCTCTCAGCTTCTCATCATCTCACCCCACAAA
ACCAAACCAACGATCCACTACAAATGCCACGTCAGCCCTAGAATGTCCCT
CGACCAACAGCGGCCCCCTTCTTCTTCTTCTTCTTCTACTTCTCCAACGA
GGCTCCTCACAGCCGTCACCAAACTCCTGTGGGGCCCATCGCTTCCGCCT
GGACTCCTTGTCTCCACTGTCCGTACATCATGGAACGCCGCGTGGCAACT
CATGATGTCGCAACTCGCCCCCTCCGATTCTTCAGGCAGCTATACCCGAC
CCGCTTCAAAATTCTTCCTCATAAACAACCCGCCATCCACAGCCAACCTT
CACCTCTACGTGGGACTCCCCTGTCCGTGGGCCCACCGGACACTGATAGT
GCGAGCGCTCAAAGGCCTCGAAGACGCCGTCCCCGTCTCAATCGCCGGGC
CGGGGCAAGACGGTTCTTGGGAATTTACCAATAACCGTAACCCCTCCCGG
GATAAGGATATCCCTGTTCCGGGTTTGGATAATGAAAATGGGTGTAAGAA
TTTGAAGGAGGTTTATAAGTTAAGGAAGGGAGGCTATAGCGGGAGAGCCA
CTGTGCCGATGTTATGGGATGTGGACAATAAGGATGTGGCGTGTAACGAG
AGTTATGATATAATTCAGTTTTTTTAATTCGGGNTTTAACAGGTCGGCCC
GTAATCCGGATTGGATCTT
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