FC929919

Overview
NameFC929919
Unique NameFC929919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15054 contig Ccv1_Contig15054:2..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: NSP5_ARATH (Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.018e-64
Identity = 105/185 (56.76%), Postives = 136/185 (73.51%), Query Frame = 3
Query:   96 MASAKGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGR 650
            M   +  W+K+ QKG+GPGARSSHA+T+VG KVY FGGE  P + +DN+L+VFDLET  WS+A  TG+ P P  GV+M  +G TIY++GGRD   +  N L+S+DT TN+W LL+  + G P RSYHS A DDR VY+FGG    GR+N L  +DVVD+KW++YP+AGE CKGRG PGL+V +GR
Sbjct:    1 MCPVENKWLKVGQKGAGPGARSSHAMTVVGNKVYCFGGELKPTIHIDNDLYVFDLETQEWSIAPATGEAPFPCFGVSMVTIGSTIYVYGGRD-DKRRYNGLHSYDTETNEWKLLAPVEEGLPGRSYHSMAGDDRKVYVFGGVTAKGRVNTLHAYDVVDQKWVEYPAAGEACKGRGAPGLVVVEGR 184          

HSP 2 Score: 35.039 bits (79), Expect = 1.018e-64
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  644 GEIWVVYGFAGVEVDDVHCF 703
            G IWV++GF G E+ D+HCF
Sbjct:  183 GRIWVLFGFDGNELGDIHCF 202          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: NSP1_ARATH (Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 3.135e-57
Identity = 96/181 (53.04%), Postives = 128/181 (70.72%), Query Frame = 3
Query:  111 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPP-PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGR 650
            G WIK++QKG GPG R SH I  VG K+Y+FGGEFTP  P+D +L+VFDLET TWS++  TGDVP    +GV M +VG T+Y+FGGRD + ++ N  YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QG+
Sbjct:  151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSVGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGK 330          

HSP 2 Score: 37.3502 bits (85), Expect = 3.135e-57
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  644 GEIWVVYGFAGVEVDDVHCF 703
            G++WVVYGF G EVDDVH +
Sbjct:  329 GKVWVVYGFNGCEVDDVHYY 348          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: NSP2_ARATH (Nitrile-specifier protein 2 OS=Arabidopsis thaliana GN=NSP2 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.558e-56
Identity = 92/182 (50.55%), Postives = 125/182 (68.68%), Query Frame = 3
Query:  108 KGTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPP-PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGR 650
            +G WIK++QKG GPG R SH I  VG K+++FGGE TP  P+D +L+VFDLET TWS++  TGDVP    +GV M ++G ++Y+FGGRD + K  N  YSFDT  N+W LL+  + GP  RS+HS  AD+ +VY+FGG   + RL  L  +++VD KW+Q  + G +C  RGG GL V QG+
Sbjct:  151 RGKWIKVEQKGEGPGPRCSHDIAQVGNKIFSFGGELTPNQPIDKHLYVFDLETRTWSISPATGDVPNLSCLGVRMVSIGSSLYVFGGRDASRK-YNGFYSFDTTKNEWKLLTPVEQGPTPRSFHSMTADENNVYVFGGVSATVRLKTLDAYNIVDHKWVQCSTPGGSCSVRGGAGLEVVQGK 331          

HSP 2 Score: 41.5874 bits (96), Expect = 7.558e-56
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 2
Query:  644 GEIWVVYGFAGVEVDDVHCF 703
            G++WVVYGF G EVDDVHC+
Sbjct:  330 GKVWVVYGFNGCEVDDVHCY 349          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: NSP4_ARATH (Nitrile-specifier protein 4 OS=Arabidopsis thaliana GN=NSP4 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.702e-55
Identity = 90/181 (49.72%), Postives = 126/181 (69.61%), Query Frame = 3
Query:  111 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGR 650
            G W K+D+ G GPG R SH I  VG K+Y+FGGEFTP  P+D +L+VFD+E+ TWS++  TGD+P    +GV M ++G T+Y+FGGRD + ++ N  YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QG+
Sbjct:  300 GKWTKVDENGDGPGLRCSHDIAQVGNKIYSFGGEFTPNQPIDKHLYVFDIESRTWSISPATGDIPTLSCLGVCMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGK 479          

HSP 2 Score: 37.3502 bits (85), Expect = 3.702e-55
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  644 GEIWVVYGFAGVEVDDVHCF 703
            G++WVVYGF G EVDDVH +
Sbjct:  478 GKVWVVYGFNGCEVDDVHYY 497          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: NSP3_ARATH (Nitrile-specifier protein 3 OS=Arabidopsis thaliana GN=NSP3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.581e-53
Identity = 92/181 (50.83%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  111 GTWIKLDQKGSGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPP-PRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGR 650
            G WIK++Q G GPG R SH I  VG K+Y+FGGE  P  P+D +L+VFDLET TWS+A  TGDVP    +GV M +VG T+Y FGGRD + ++ N  YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG G   R+  L  +++VD+ W    + G++   RGG GL V QG+
Sbjct:  151 GNWIKVEQNGEGPGLRCSHGIAQVGNKIYSFGGELIPNQPIDKHLYVFDLETRTWSIAPATGDVPHLSCLGVRMVSVGSTLYTFGGRDFS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVGAMDRIKTLDSYNIVDKTWFHCSNPGDSFSIRGGAGLEVVQGK 330          

HSP 2 Score: 36.965 bits (84), Expect = 2.581e-53
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  644 GEIWVVYGFAGVEVDDVHCF 703
            G++W+VYGF G EVDDVH +
Sbjct:  329 GKVWIVYGFNGCEVDDVHFY 348          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: ESP_ARATH (Epithiospecifier protein OS=Arabidopsis thaliana GN=ESP PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 88/191 (46.07%), Postives = 118/191 (61.78%), Query Frame = 3
Query:  108 KGTWIKLDQKG-SGPGARSSHAITIVGQKVYAFGGEFTPRVPVDNNLHVFDLETLTWSVADVTGDVPPPR-VGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGD--AGPPHRSYHSTAADDRHVYIFGGCGVSGRLN------DLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGR 650
            +G WIK+ QKG +GPG RSSH I  VG K+Y+FGGE TP   +D +L+VFD  T TWS+A   GD P    +GV M AVG  IY+FGGRD  ++      S+DT T++WT L+  D   GP  R++HS A+D+ HVY+FGG    G +N       +  +++ D KW Q P  G+N + RGG G  V QG+
Sbjct:    6 QGQWIKVGQKGGTGPGPRSSHGIAAVGDKLYSFGGELTPNKHIDKDLYVFDFNTQTWSIAQPKGDAPTVSCLGVRMVAVGTKIYIFGGRD-ENRNFENFRSYDTVTSEWTFLTKLDEVGGPEARTFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQLPDPGDNFEKRGGAGFAVVQGK 195          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: RABEK_CHICK (Rab9 effector protein with kelch motifs OS=Gallus gallus GN=RABEPK PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  111 GTWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPV-DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 578
            GTW   +  G  P  R+ H  +  +G  +Y FGG      PV D  LHVFD   L W+  D  GD P PR G  + AVG  +++ GG  G     N+L+  DT   +W  ++     P  R+ HS+A    H+YIFGG G  G L+  + + + +++W
Sbjct:  122 GTWESPEVTGIPPLPRTFHTSSAAIGDCLYVFGGGDKGAEPVKDQQLHVFDTVALAWTQPDTHGDPPSPRHGHVVVAVGTKLFIHGGLAG-DIFYNDLFCIDTTDMKWVKIAATGDVPGGRASHSSAVFKDHLYIFGGIGPDGTLDTTYKYHIEEQQW 278          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: RABEK_HUMAN (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  114 TWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPV-DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 578
            TW   +     P  R+ H  +  +G ++Y FGG      PV D  LHVFD  TLTWS  +  G+ P PR G  M A G  +++ GG  G  +  ++L+  D    +W  L+   A P   + HS  A  +HVYIFGG   +G L+ ++ +   ++ W
Sbjct:  125 TWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHW 280          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: RABEK_BOVIN (Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  114 TWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPV-DNNLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 578
            TW   +  G  P  R+ H  +  +G ++Y FGG      PV D  LHVFD  TLTWS  +  G  P PR G  M A G  +++ GG  G +   ++L+  D    +W  L    A P   + HS  A  +H+Y+FGG   +G LN ++ + +  + W
Sbjct:  125 TWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTKLFIHGGLAGDN-FYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHW 280          
BLAST of FC929919 vs. ExPASy Swiss-Prot
Match: RABEK_MOUSE (Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 3
Query:   96 MASAKGTWIKLDQKGSGPGARSSHAITI-VGQKVYAFGGEFTPRVPVDN-NLHVFDLETLTWSVADVTGDVPPPRVGVTMAAVGHTIYMFGGRDGTHKELNELYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKW 578
            M+    TW   +  GS P  R+ H  +  +G ++Y FGG      PV++  LHVFD  TLTWS  +  G  P PR G  M A G  +++ GG  G  K  ++L+  D     W  L    A P   + H+  A   HVY+FGG   +G LN ++ +    + W
Sbjct:  127 MSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGLAG-DKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHW 288          
The following BLAST results are available for this feature:
BLAST of FC929919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NSP5_ARATH1.018e-6456.76Nitrile-specifier protein 5 OS=Arabidopsis thalian... [more]
NSP1_ARATH3.135e-5753.04Nitrile-specifier protein 1 OS=Arabidopsis thalian... [more]
NSP2_ARATH7.558e-5650.55Nitrile-specifier protein 2 OS=Arabidopsis thalian... [more]
NSP4_ARATH3.702e-5549.72Nitrile-specifier protein 4 OS=Arabidopsis thalian... [more]
NSP3_ARATH2.581e-5350.83Nitrile-specifier protein 3 OS=Arabidopsis thalian... [more]
ESP_ARATH1.439e-4246.07Epithiospecifier protein OS=Arabidopsis thaliana G... [more]
RABEK_CHICK6.506e-1934.81Rab9 effector protein with kelch motifs OS=Gallus ... [more]
RABEK_HUMAN1.110e-1833.76Rab9 effector protein with kelch motifs OS=Homo sa... [more]
RABEK_BOVIN1.893e-1833.76Rab9 effector protein with kelch motifs OS=Bos tau... [more]
RABEK_MOUSE2.472e-1833.74Rab9 effector protein with kelch motifs OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC34001H02EF PostHarvC1 Citrus clementina cDNA clone C34001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929919 ID=FC929919; Name=FC929919; organism=Citrus clementina; type=EST; length=705bp
GAGAGCCAGAAGAAAGAAATCAGGCTGCAGAGTGGAGACTGGAGAGTAAC
TCTTGGGTCTTGGCCATTCTCCCCTATCCTTATCCCAAGTCATAAATGGC
TTCTGCCAAAGGCACATGGATCAAGCTTGACCAAAAGGGTTCCGGGCCTG
GAGCCAGAAGCTCGCATGCAATTACCATAGTAGGACAAAAGGTCTATGCT
TTCGGGGGCGAGTTCACACCACGTGTCCCGGTTGACAACAACCTCCATGT
CTTCGACCTCGAAACCCTAACATGGTCTGTGGCCGATGTTACTGGGGACG
TCCCTCCGCCACGCGTCGGTGTCACAATGGCTGCGGTTGGACATACCATC
TATATGTTTGGTGGTCGGGATGGTACACACAAGGAGCTCAATGAGCTGTA
CTCTTTTGACACGCGTACAAACCAGTGGACCCTATTATCTAACGGTGATG
CTGGCCCCCCTCATAGGAGCTACCACTCAACGGCCGCTGATGATCGACAC
GTGTACATCTTCGGCGGTTGTGGTGTTTCAGGCCGGCTTAATGATCTATG
GGGTTTTGATGTTGTTGATAGAAAATGGATCCAATATCCATCGGCAGGGG
AGAACTGCAAGGGTAGAGGTGGGCCCGGGTTGATAGTGACCCAGGGGAGA
TATGGGTTGTGTATGGTTTTGCTGGAGTGGAAGTGGATGATGTGCATTGC
TTTGA
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