FC929923

Overview
NameFC929923
Unique NameFC929923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WD82B_XENLA (WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-B PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52
Identity = 98/216 (45.37%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV+SL MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +LL+T
Sbjct:    2 KLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVSLSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTALKFSNDGKLILLST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR82_MOUSE (WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52
Identity = 96/216 (44.44%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:    2 KLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR82_HUMAN (WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52
Identity = 96/216 (44.44%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:    2 KLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR82_CHICK (WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.288e-51
Identity = 96/216 (44.44%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:    2 KLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILIST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR82_XENTR (WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.682e-51
Identity = 96/216 (44.44%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFSNDGK +L++T
Sbjct:    2 KLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTALKFSNDGKLILMST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR82_DANRE (WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 95/216 (43.98%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV++L MSPV+D+F+SGSLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  + T E   +KFSNDGK +L++T
Sbjct:    2 KLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLKFSNDGKLILVST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WD82A_XENLA (WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-A PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.144e-50
Identity = 94/216 (43.52%), Postives = 147/216 (68.06%), Query Frame = 2
Query:   38 ELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFSNDGKSMLLTT 682
            +L D  +RS  +A +F +   KIN  DF    + ++++SDDDS+ LYD    K  +T Y KK+G D + +TH  ++V+    Y+ +   +++RYLS++DN+ +RYF GH +RV++L MSPV+D+F+S SLD ++R+WDLR   CQG++ L+G+P  +FD +GL+FA  + +  +KL+D RS+DKGPF TF +  D T E   +KFS DGK +L++T
Sbjct:    2 KLTDGVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVV----YSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISASLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTSLKFSQDGKLILMST 213          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: SWD2_SCHPO (Set1 complex component swd2 OS=Schizosaccharomyces pombe GN=swd2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.869e-34
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 2
Query:   89 DFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVI-CSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFD----TFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            +F G+I SL F    +L + +  DD+++LY+ +  K +K+   KK+GA    FTHH +S+I  STK +      ++RYL +  NR LRYF GHK+ V S+ +SP +++F+S SLD+++R+WDLR   CQG+L +      AFD  GL+FA V+     I L++ +S+D  PF     TFL       + +++FS DGK +LLTT
Sbjct:   24 NFVGEITSLSFDDSGELCLASCTDDTLQLYNCISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKED-----NTVRYLDVVTNRYLRYFPGHKQTVTSIDVSPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKSFDARPFQDIPLTFL--PPHVRIANVEFSTDGKYLLLTT 220          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: SWD2_YEAST (COMPASS component SWD2 OS=Saccharomyces cerevisiae GN=SWD2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 72/200 (36.00%), Postives = 113/200 (56.50%), Query Frame = 2
Query:   98 GKINSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVI-CSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTTI 688
            G + SL+F      L+T+S +D+++LY     K + T   KK+G     FTH  +  I  ST  N D     ++YL++  N+ LRYF GH   V  L M+PVND+F+S S D SVR+WDL+++  Q I+       +A+D  GLVFA+   E   I L++ +   +GPF    +   T ++   ++FSN+GK +L+ ++I
Sbjct:   28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNECIYSSTMKNFD-----IKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVPNCIAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSI 222          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: YIQ4_SCHPO (Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe GN=SPAC824.04 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 79/231 (34.20%), Postives = 124/231 (53.68%), Query Frame = 2
Query:   41 LDDETVRSMAMAAIFSD--FGGKINSLDFHRKDDLLVTA-SDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICST-KYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNA-CQGILRLRGRPTVAFDQQGLVFAVAMEA-GAIKLFDSRSYDKGPFDTFLVGGD-----------TAEVCDIKFSNDGKSMLLTT 682
            +D   + S+  A  F D   G  INS+D+    + + T  S DD+V++YD +  K + T    + G +   FTHH  +++ ST K N D     ++Y+S+YDN+ + YF GH + V S+ +SP+ D F+S + D ++++W +  ++ C G L L      A+D  GLVFAVA  +   I L+D R+Y   PF TF +                E   ++FSNDGK +LL+T
Sbjct:    1 MDIGILSSLKPAQSFRDNSLGSFINSIDYSDSGEYVATTCSADDTVQIYDALDPKQVHTITCFETGIEVARFTHHDHNLLLSTTKGNKD-----IQYVSIYDNKRISYFSGHTDIVSSIEVSPIEDQFVSTANDKTLKLWKMNQSSRCLGNLDLPSLGIPAYDPTGLVFAVACHSLSRIFLYDVRNYGSDPFSTFTIDDSRYLSRFSFPPMMPEWKHMEFSNDGKCILLST 226          
The following BLAST results are available for this feature:
BLAST of FC929923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
WD82B_XENLA4.427e-5245.37WD repeat-containing protein 82-B OS=Xenopus laevi... [more]
WDR82_MOUSE9.862e-5244.44WD repeat-containing protein 82 OS=Mus musculus GN... [more]
WDR82_HUMAN9.862e-5244.44WD repeat-containing protein 82 OS=Homo sapiens GN... [more]
WDR82_CHICK1.288e-5144.44WD repeat-containing protein 82 OS=Gallus gallus G... [more]
WDR82_XENTR1.682e-5144.44WD repeat-containing protein 82 OS=Xenopus tropica... [more]
WDR82_DANRE2.870e-5143.98WD repeat-containing protein 82 OS=Danio rerio GN=... [more]
WD82A_XENLA4.144e-5043.52WD repeat-containing protein 82-A OS=Xenopus laevi... [more]
SWD2_SCHPO1.869e-3440.20Set1 complex component swd2 OS=Schizosaccharomyces... [more]
SWD2_YEAST1.873e-2636.00COMPASS component SWD2 OS=Saccharomyces cerevisiae... [more]
YIQ4_SCHPO1.586e-2534.20Uncharacterized WD repeat-containing protein C824.... [more]

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Properties
Property NameValue
Genbank descriptionC34001H06EF PostHarvC1 Citrus clementina cDNA clone C34001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929923 ID=FC929923; Name=FC929923; organism=Citrus clementina; type=EST; length=702bp
GACAAGTGAAACATCAATGGCGACGACGTCGCTCGCAGAACTCGATGATG
AAACGGTGCGCAGCATGGCAATGGCTGCAATTTTCTCAGACTTTGGTGGG
AAGATAAATTCACTTGACTTTCATCGAAAAGACGATTTATTGGTGACGGC
TAGTGACGATGACTCTGTGCGACTTTATGATATTGTCGGTGCTAAGTTGA
TCAAGACCACGTACCACAAGAAACATGGTGCTGATTGTGTTTGCTTTACC
CATCACCCAAGCTCTGTTATTTGCTCGACAAAATATAATCTTGATTCTAC
TGGAGAGTCTCTGCGGTATCTATCAATGTATGATAATCGAATTCTTCGCT
ACTTCAAAGGGCATAAGGAGAGGGTTATTTCTCTCTGCATGTCTCCAGTT
AATGATAGCTTTATGTCTGGTTCTCTTGACCACAGCGTTAGAATATGGGA
TCTTCGTGTTAATGCTTGCCAGGGAATTTTACGTCTGCGTGGTAGACCTA
CAGTTGCATTTGATCAACAAGGCCTTGTCTTTGCGGTGGCAATGGAAGCG
GGTGCTATCAAATTGTTTGACTCACGTTCCTACGACAAGGGTCCCTTTGA
CACATTTCTAGTAGGTGGGGATACAGCAGAGGTTTGTGATATTAAATTTA
GCAATGATGGTAAATCAATGCTCTTGACAACCACAATAACACATTTATGT
TC
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