FC929925

Overview
NameFC929925
Unique NameFC929925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14358 contig Ccv1_Contig14358:4..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_ARATH (Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.205e-67
Identity = 135/202 (66.83%), Postives = 157/202 (77.72%), Query Frame = 1
Query:  103 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDS-DNDDTLKLHLKDMELNFSWSVTRIKATLSHLGSPF-PSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKDIHGKP 702
            MEVKARAPGKIILAGEHAVVHGSTAVAA IDLYTYV+LRFP  S +N+D L L LKD+ L FSWS+ RIK  + +  S    STP +CS E +KSIAVLVEEQN+P+ K+ LSSG + FLWLYT IIGF PATVV+ S+LP G+GLGSSAA CV+LTAALL S  S+       GW +  E++L+LLNKWAFEGEK IHGKP
Sbjct:    1 MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKDISLEFSWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGISTFLWLYTRIIGFNPATVVINSELPYGSGLGSSAALCVALTAALLAS--SISEKTRGNGWSSLDETNLELLNKWAFEGEKIIHGKP 200          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_HUMAN (Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 80/200 (40.00%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  121 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDNDDTLKLHLKDMELNFSWSVTRIKA-TLSHLGSPFPSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSSGATAFLWLYTSIIGFKPA----TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSV-HLDKNHQGWLTYGESDLDLLNKWAFEGEKDIHGKP 702
            APGK+IL GEHAVVHG  A+A  ++L T++ L+  S+   D    L L ++ +  +W V R+++   S L     +TPT+  +E +K +A L ++  + E    L     AFL+LY SI   + A     +VV S+LP GAGLGSSAA+ V L AALL     + +  K+      + + DL+L+NKWAF+GE+ IHG P
Sbjct:   10 APGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVD----LSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVL-----AFLYLYLSICRKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLELINKWAFQGERMIHGNP 200          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_BOVIN (Mevalonate kinase OS=Bos taurus GN=MVK PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 74/200 (37.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:  121 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDNDDTLKLHLKDMELNFSWSVTRIK-ATLSHLGSPFPSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSSGATAFLWLYTSIIGFKPA----TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSV-HLDKNHQGWLTYGESDLDLLNKWAFEGEKDIHGKP 702
            APGK+IL GEHAVVHG  A+A  ++L T++ L+      ++  + L+L ++ +  +W V  ++    S LG    +  T   +E +K +A   ++   PE          AFL+LY SI   + A     + V S+LP GAGLGSSAA+ V L AALL +   + +  K+ +    + E +L+L+NKWAF+GE+ IHG P
Sbjct:   10 APGKVILHGEHAVVHGKVALAVALNLRTFLRLQ----PHSNGRVGLNLPNIGVRRAWDVASLQLLDTSFLGHGDSAALTAKHVEKLKEVAGFPKDCVDPE-----HLAVLAFLYLYLSICQSQRALPSLDITVWSELPTGAGLGSSAAYSVCLAAALLTACEEIPNPLKDGEAAGRWTEENLELINKWAFQGERVIHGNP 200          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_MOUSE (Mevalonate kinase OS=Mus musculus GN=Mvk PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 77/201 (38.31%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  121 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDNDDTLKLHLKDMELNFSWSVTRI-KATLSHLGSPFPSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSSGA-TAFLWLYTSII----GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLD-KNHQGWLTYGESDLDLLNKWAFEGEKDIHGKP 702
            APGK+IL GEHAVVHG  A+AA ++L T++ LR      ++  + ++L ++ +   W V  + +   S L     S PT   +E +K +       ++P  + G    A  AFL+LY +I           +VV S+LP GAGLGSSAA+ V L AALL +   V    K+      + E DL  +NKWAFEGE+ IHG P
Sbjct:   10 APGKVILHGEHAVVHGKVALAAALNLRTFLLLR----PQSNGKVSVNLPNIGIKQVWDVGMLQRLDTSFLEQGDVSVPTLEQLEKLKKMG------DLPRDRAGNEGMALLAFLYLYLAICRKQRTLPSLDMVVWSELPPGAGLGSSAAYSVCLAAALLTACEEVSNPLKDGVSVSRWPEEDLKSINKWAFEGERVIHGNP 200          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_RAT (Mevalonate kinase OS=Rattus norvegicus GN=Mvk PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 76/205 (37.07%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  121 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDNDDTLKLHLKDMELNFSWSVTRIKATLSHLGSPF-----PSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSS-GATAFLWLYTSII----GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWL-TYGESDLDLLNKWAFEGEKDIHGKP 702
            APGK+IL GEHAVVHG  A+A  ++L T++ LR      ++  + L+L ++ +   W V    ATL  L + F        PT   +E +K +A       +P   +G       AFL+LY +I           ++V S+LP GAGLGSSAA+ V + AALL +   V      +G + ++ E DL  +NKWA+EGE+ IHG P
Sbjct:   10 APGKVILHGEHAVVHGKVALAVALNLRTFLVLR----PQSNGKVSLNLPNVGIKQVWDV----ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVA------GLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNP 200          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_DICDI (Mevalonate kinase OS=Dictyostelium discoideum GN=mvk PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 1
Query:  109 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDNDDTLKLHLKDMELNFS---WSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIA---VLVEEQNIPEAKIGLSSGATAFLWLYTSIIGFKPA-TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGE------SDLDLLNKWAFEGEKDIHGKP 702
            ++  APGKIIL GEHAVV   TA+A+ + L T V+  F  +++N  TL L   D+   F    WS+   K  L H    FP+      ++++K I    +  +E N    KI    G   FL+L+ ++     A  + +TSDLP+GAGLGSSA+FCVS+ A LL + ++       Q     G+        L+L+N W+ +GEK +HG P
Sbjct:    9 IQVSAPGKIILFGEHAVVLEKTAIASALSLRTTVT--FTPNTNN--TLLLDFPDLA-GFGVREWSLDEFKK-LDH----FPN-----DIDILKPIECSELFQQELN----KIIDIKGIHTFLFLFCALTKCTKAYNIKITSDLPIGAGLGSSASFCVSICAGLLKAFDTYICGGCKQCIGGQGQQQQICNEQLNLINLWSLQGEKIMHGTP 200          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_YEAST (Mevalonate kinase OS=Saccharomyces cerevisiae GN=RAR1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 65/200 (32.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:  121 APGKIILAGEHAVVHGSTAVAACID-LYTYVSLRFPSDSDNDDTLKLHLKDMELNFSWSVTRIKA-TLSHLGSPFPSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSSGATAFLWLYTSIIGF-KPATVVVTSDLPLGAGLGSSAAFCVSLTAALL---GSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKDIHGKP 702
            APGK+I+ GEH+ V+   AVAA +  L TY+ +   S+S   DT++L   D+  N  WS+    A T   + S   +     +  + + +  L++      ++      A  FL+++  +    K     + S LP+GAGLGSSA+  VSL  A+    G + S  L+K         E+D  ++N+WAF GEK IHG P
Sbjct:    9 APGKVIIFGEHSAVYNKPAVAASVSALRTYLLI---SESSAPDTIELDFPDISFNHKWSINDFNAITEDQVNSQKLAKAQQATDGLSQELVSLLDPLLAQLSESFHYHAAFCFLYMFVCLCPHAKNIKFSLKSTLPIGAGLGSSASISVSLALAMAYLGGLIGSNDLEK-------LSENDKHIVNQWAFIGEKCIHGTP 198          
BLAST of FC929925 vs. ExPASy Swiss-Prot
Match: KIME_SCHPO (Putative mevalonate kinase OS=Schizosaccharomyces pombe GN=SPAC13G6.11c PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 57/198 (28.79%), Postives = 104/198 (52.53%), Query Frame = 1
Query:  121 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDNDDTLKLHLKDMELNFSWSVTRI---KATLSHLGSPFPSTPTTCSMEVIKSIAVLVEEQNIPEAKIGLSSGATAFLWLYTSIIG-FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKDIHGKP 702
            +PGK IL GEHAVV+G+TA+AA + L +Y  L+    + N++ + + + D+     W++  +     T+ ++  P  S     ++++++ +  L++     E    + S     L+L+TS+    +  T+ ++S +PLGAGLGSSA   V +  +LL +  ++    ++          L L+  W+F GE  IHG P
Sbjct:    9 SPGKTILFGEHAVVYGATALAAAVSLRSYCKLQ----TTNNNEIVIVMSDIGTERRWNLQSLPWQHVTVENVQHPASSP----NLDLLQGLGELLKN----EENGLIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATISVVVATSLLLAFGNIEPPSSNS---LQNNKALALIEAWSFLGECCIHGTP 191          
The following BLAST results are available for this feature:
BLAST of FC929925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
KIME_ARATH2.205e-6766.83Mevalonate kinase OS=Arabidopsis thaliana GN=At5g2... [more]
KIME_HUMAN2.727e-2540.00Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1[more]
KIME_BOVIN3.334e-2337.00Mevalonate kinase OS=Bos taurus GN=MVK PE=2 SV=1[more]
KIME_MOUSE7.427e-2338.31Mevalonate kinase OS=Mus musculus GN=Mvk PE=2 SV=1[more]
KIME_RAT1.654e-2237.07Mevalonate kinase OS=Rattus norvegicus GN=Mvk PE=1... [more]
KIME_DICDI2.093e-1736.02Mevalonate kinase OS=Dictyostelium discoideum GN=m... [more]
KIME_YEAST1.039e-1632.50Mevalonate kinase OS=Saccharomyces cerevisiae GN=R... [more]
KIME_SCHPO7.444e-1528.79Putative mevalonate kinase OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC34001H08EF PostHarvC1 Citrus clementina cDNA clone C34001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929925 ID=FC929925; Name=FC929925; organism=Citrus clementina; type=EST; length=704bp
GAAACAAAATCAAGGATCTTTGTTGTTTGTTATCTCCGCCAACTTTCCGT
TGCGCAGACTGATACTGATCGTTAAGTAGTTCTGGCTTCAGAAACAAAAC
AAATGGAGGTTAAAGCCAGAGCTCCCGGGAAGATTATACTCGCCGGAGAA
CACGCCGTGGTTCATGGATCAACGGCGGTGGCAGCCTGCATTGATCTTTA
CACTTATGTCTCTCTACGTTTTCCCTCTGATTCTGATAATGACGATACAT
TGAAACTCCACCTCAAGGATATGGAACTAAATTTTTCCTGGTCAGTTACG
AGAATAAAAGCAACACTATCTCACTTGGGTAGCCCATTTCCCTCAACACC
CACCACATGCTCAATGGAAGTCATCAAATCTATTGCAGTTCTCGTTGAGG
AGCAAAATATTCCAGAGGCAAAAATTGGACTTTCTTCTGGAGCGACAGCT
TTTCTCTGGTTATACACCTCTATCATTGGGTTTAAGCCTGCCACAGTCGT
TGTTACTTCTGACCTTCCACTAGGTGCAGGCCTTGGTTCATCTGCTGCAT
TTTGTGTCTCACTCACAGCTGCTCTGCTTGGTTCCTTAAATTCTGTACAT
TTGGATAAGAACCACCAAGGATGGTTAACATATGGGGAGAGCGATCTTGA
TTTGTTGAATAAATGGGCTTTCGAAGGTGAGAAAGATATTCATGGAAAGC
CATC
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