FC929929
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_XENTR (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smndc1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13 Identity = 60/176 (34.09%), Postives = 89/176 (50.57%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAE-ATKLAIKRKIEQAAASDFQSK 632 E+L L+ YK QLQQV L + N + ++K+L EVI LT++LL++ SET A ++ + SGS + VG K AV+S+DG+WY+A IE I NG +T+ +GN E N+RPV E K E + L + +K AA +++ K Sbjct: 3 EDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQEVIELTKDLLSS------QPSETADDAC---------DDMSASGS-----QSWKVGEKCMAVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE---EGRKAKEDSGNLPMSKKEMIAAQREYKKK 155
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_DANRE (Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 59/184 (32.07%), Postives = 88/184 (47.83%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLL--VEAEKVAEATKLAIKRKIE-QAAASDFQSKSLPAKL 650 EEL LS YK QLQQV L DP N + ++K+L EVI LT++LL + Q A + T +S + +P+ VG A +S+DG+ Y+A IE I NG +T+ +GN A V P+++L VE ++ + K K E QA +++ K K+ Sbjct: 3 EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQEVIELTKDLLTS--QPAEGTTSTKSSETVAPS------------------HSWRVGDHCMATWSQDGQVYEAEIEEIDNENGTAAITFAGYGN------AEVMPLHMLKKVEEGRIRDEIDGKPKSKKELQAEQREYKKKKAQKKV 160
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_RAT (Survival of motor neuron-related-splicing factor 30 OS=Rattus norvegicus GN=Smndc1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQ--EKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQ 605 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q E T S S + Q VG K AV+SEDG+ Y+A IE I NG +T+ +GN E N++PV +A++ + ++ K I Q Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST----------------------QPSETLTSSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQ 148
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_HUMAN (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQ 605 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ + AS P VG K AV+SEDG+ Y+A IE I NG +T+ +GN E N++PV +A++ + ++ K I Q Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQ 148
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_PONAB (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11 Identity = 52/166 (31.33%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQ 605 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ + AS P VG K A++SEDG+ Y+A IE I NG +T+ +GN E N++PV +A++ + ++ K I Q Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQ 148
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_MOUSE (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus GN=Smndc1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11 Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQ 605 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ + AS P VG K AV+SEDG+ Y+A IE I NG +T+ +GN E N++PV +A++ + ++ K I Q Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQ 148
BLAST of FC929929 vs. ExPASy Swiss-Prot
Match: SPF30_BOVIN (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11 Identity = 52/166 (31.33%), Postives = 81/166 (48.80%), Query Frame = 3 Query: 114 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQ 605 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ AS P VG K A++SEDG+ Y+A IE I NG +T+ +GN E N++PV +A++ + ++ K I Q Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--NFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQ 148 The following BLAST results are available for this feature:
BLAST of FC929929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929929 ID=FC929929; Name=FC929929; organism=Citrus clementina; type=EST; length=695bpback to top |