FC929940

Overview
NameFC929940
Unique NameFC929940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15069 contig Ccv1_Contig15069:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 62/208 (29.81%), Postives = 102/208 (49.04%), Query Frame = 2
Query:   89 FLTRILATMNPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQL--------LGLYSNWISWTFTIILNISVSLALYSLVIFY 688
            FLT  LA      V+ +     ++LT H   Q+ S H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL L + YL     ++ +  EI+G+ I  S        R    +   L+  K  T QF +++PV +++ I LQ           ++S ++    T++ N SVSLALY+L +FY
Sbjct:   52 FLTSALAR----GVSGVFVWTALLLTGH---QIYS-HLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYL--YVTLVYNASVSLALYALFLFY 245          
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184B_MOUSE (Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 54/174 (31.03%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  197 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHS--FPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFY 688
            H   + +P EQ+              DS++ L+ F   + ++++  +V++CYEA VI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y        S ++    TII NISVSLALY+L +FY
Sbjct:   68 HLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEAFVIYNFLSLCYEYLG---GESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSGYL--YVTIIYNISVSLALYALFLFY 233          
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 62/208 (29.81%), Postives = 102/208 (49.04%), Query Frame = 2
Query:   89 FLTRILATMNPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQL--------LGLYSNWISWTFTIILNISVSLALYSLVIFY 688
            FLT  LA      V+ +     ++LT H   Q+ S H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL L + YL     ++ +  EI+G+ I  S        R    +   L+  K  T QF +++PV +++ I LQ           ++S ++    T++ N SVSLALY+L +FY
Sbjct:   52 FLTSALAR----GVSGVFVWTALLLTGH---QIYS-HLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYL--YVTLVYNASVSLALYALFLFY 245          
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  197 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHS--FPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFY 688
            H   +  P EQ+              DS++ L+ F   + ++++  +V++CYEALVI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y        S ++    TII NISVSLALY+L +FY
Sbjct:   68 HLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYL--YVTIIYNISVSLALYALFLFY 233          
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  197 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHS--FPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFY 688
            H   +  P EQ+              DS++ L+ F   + ++++  +V++CYEALVI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y        S ++    TII NISVSLALY+L +FY
Sbjct:   68 HLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYL--YVTIIYNISVSLALYALFLFY 233          
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/172 (31.40%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  197 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFY 688
            H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL+L + YL     +  +  EI+G+ I  S        R    +   L+  K  T QF +++PV ++  I LQ  G Y        S ++    T+I N SVSLALY+L +FY
Sbjct:   77 HLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYL--YVTLIYNASVSLALYALFLFY 242          
BLAST of FC929940 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  197 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTHFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFY 688
            H  S+  P EQ+              DS++ L+   G    +++ +SV++CYEA VI  FL+L + YL     ++ +  EI+G+ +  S        R    +   L+  K  T QF +++P+ +++ I LQ  G Y        S ++    T++ N SVSLALY+L +FY
Sbjct:   67 HLRSYTVPHEQRYIIRLLFIVPVYAFDSWLSLL-LLGGHQHYIYFDSVRDCYEAFVIYSFLSLCFQYLG---GESAIMAEIRGKPVRTSCFHGTCCLRGMTYSIGFLRFCKQATLQFCIVKPIMALVTIVLQAFGKYHDGDFNVRSGYL--YITLVYNASVSLALYALFLFY 232          
The following BLAST results are available for this feature:
BLAST of FC929940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
T184A_MOUSE3.664e-1429.81Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]
T184B_MOUSE4.785e-1431.03Transmembrane protein 184B OS=Mus musculus GN=Tmem... [more]
T184A_RAT4.785e-1429.81Transmembrane protein 184A OS=Rattus norvegicus GN... [more]
T184B_HUMAN6.249e-1431.61Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN6.249e-1431.61Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184A_HUMAN6.249e-1431.40Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184A_BOVIN2.375e-1329.65Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]
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Properties
Property NameValue
Genbank descriptionC34002A11EF PostHarvC1 Citrus clementina cDNA clone C34002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929940 ID=FC929940; Name=FC929940; organism=Citrus clementina; type=EST; length=700bp
CTAATCATCTAAGATCATCTCATTCTTACAAAAGCGAGTCAGTTGTCAAC
TGCAGGAAGCTTGACTTTCAAAGAGTGTGAATTCGGGTTTTTTAACGAGA
ATTTTAGCTACAATGAATCCGGCACGAGTCACTTTTATGGCAGCCACTGT
TTGCGTGATGCTTACCACGCATTTCTCGACGCAGCTTCTCTCAGAACACT
TTCTTTCCTGGAAAAAGCCAAAGGAGCAAAAAGCTATAATAATTATCATT
CTTATGGCACCTATATATGCTATTGACTCTTATGTTGGTTTGATAGATTT
TCAGGGGAGCAAGGCCTTTTTTATGTTCTTGGAATCAGTTAAGGAATGTT
ATGAGGCCTTGGTGATAGCCAAGTTCTTGGCCTTGCTGTACAGCTACTTG
AATATATCAATAAGCAAAAACATAGTGCCAGATGAGATCAAAGGAAGGGA
GATTCACCATTCATTTCCAATGACTCATTTTCAGCCTCGGACAACTCGTT
TGAACCATCATACACTAAAGCTTCTCAAGGACTGGACGTGGCAGTTTGTT
GTGATCCGCCCTGTCTGCTCCATATTGATGATTGCTCTTCAACTTCTTGG
GTTATATTCCAATTGGATTAGCTGGACATTCACAATTATTCTTAACATTT
CTGTGTCACTTGCTTTGTATTCTCTTGTCATCTTCTACATGTTTTCGCTA
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