FC929941

Overview
NameFC929941
Unique NameFC929941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929941_ssr78 microsatellite FC929941_ssr78:78..93. BLAST: Citrus ESTs to Prunus persica proteins V1
FC929941_ssr499 microsatellite FC929941_ssr499:499..510. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig688 contig Ccv1_Contig688:47..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929941 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.344e-20
Identity = 71/173 (41.04%), Postives = 92/173 (53.18%), Query Frame = 2 
Query:  197 NVNFVSGFPSTKSL----LANGHSSYLAFVKLATK------SSISIK-GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIV 679
            ++N  S  PST SL    L+   ++ L  +   T       S+ SIK   GK +A +IS E DLL++ NGN  ++  +  DD+     L+ D+++ G LAAD+AP                 PT GFSSIPEAIEDIRQGK               L+MAAQLATPEAMAFIV
Sbjct:    3 SINLSSSSPSTISLSRSRLSQSSTTLLHGLHRVTLPSNHPLSTFSIKTNTGKVKAAVISREDDLLSFTNGNTPLSNGSLIDDRTEE-PLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIV 174

HSP 2 Score: 21.557 bits (44), Expect = 2.344e-20
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 1 
Query:  679 KHGTGIVC 702
            +HGTGIVC
Sbjct:  175 RHGTGIVC 182
The following BLAST results are available for this feature:
BLAST of FC929941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RIBBA_ARATH2.344e-2041.04Riboflavin biosynthesis protein ribBA, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC34002A12EF PostHarvC1 Citrus clementina cDNA clone C34002A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929941 ID=FC929941; Name=FC929941; organism=Citrus clementina; type=EST; length=704bp
GAAAGACGAAACACAAACAGCGAAGACTCATTCAGCTTTGTTGTTGTTAG
AAGAGAGATAGAGATTACTGGAGAGAAAGAGAGAGAGAGAGAGGCTTAAA
CCCATAACAAATACAAGGGGAAAATAATTAATGGCGGCGTCTCTCAACAT
ATCTTCTCCTTCAACTTCAGCTCTCTCTTCTCCTCCAGCACGCAGAAATG
TGAATTTTGTTAGTGGATTTCCCAGTACGAAGTCACTTTTGGCAAATGGG
CACTCTTCATATTTGGCCTTTGTAAAGCTAGCTACTAAATCATCCATTAG
TATCAAGGGTGTCGGCAAAACTAGAGCTACACTGATATCTGGAGAAGGTG
ACCTTTTAGCTTATCCCAATGGCAATAACCTTGTGGCCGAAAGTACTGGT
GCTGATGATCAATTGGTGGGGATTGAGTTACAACCGGATGCAATAGCATT
TGGAGCACTTGCAGCAGATACCGCTCCCACAACTTTTGGATTTTCCAGTG
ATGATGATGAATTTGATTTGGATAGCCCTACAGAAGGTTTTTCTTCTATC
CCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGTCGTGGTCGTGGA
TGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCAGCACAGCTCG
CAACACCTGAAGCTATGGCATTTATTGTAAACATGGAACTGGAATTGTTT
GCGT
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