FC929944

Overview
NameFC929944
Unique NameFC929944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7339 contig Ccv1_Contig7339:609..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROVI (YjeF N-terminal domain-containing protein GJ19543 OS=Drosophila virilis GN=GJ19543 PE=4 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.141e-24
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE+G + D  ++P +L+SLTAPKLCAK F G HHFLGGRFVPP +  KY+L LP YPG  +C+ +
Sbjct:  149 QTKLPIASVDIPSGWDVEQGKLNDCDLEPTLLISLTAPKLCAKHFKGKHHFLGGRFVPPALQRKYELNLPAYPGNELCLEL 229          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROGR (YjeF N-terminal domain-containing protein GH12525 OS=Drosophila grimshawi GN=GH12525 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.048e-23
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE G + D  ++P +L+SLTAPKLCAK F G HHFLGGRFVPP +  KY+L LP YPG  +C+ +
Sbjct:  149 QTKLPIASVDIPSGWDVENGKLNDCDLEPTLLISLTAPKLCAKHFKGKHHFLGGRFVPPALQRKYELNLPEYPGNELCLEL 229          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROAN (YjeF N-terminal domain-containing protein GF19489 OS=Drosophila ananassae GN=GF19489 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.787e-23
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I SVDIPSGW VE+G + D  ++PD+L+SLTAPK+CA+ F G +H+LGGRFVPP +  KY L LP YPG  +C+++
Sbjct:  154 IASVDIPSGWDVEKGKVNDSDLEPDLLISLTAPKICARNFKGRYHYLGGRFVPPALQRKYDLNLPTYPGNELCLKL 229          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROMO (YjeF N-terminal domain-containing protein GI11178 OS=Drosophila mojavensis GN=GI11178 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.334e-23
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE G + +  ++P +L+SLTAPKLCAK F G HHFLGGRFVPP +  KY+L LP YPG  MC+ +
Sbjct:  149 QTKLPIASVDIPSGWDVEAGKLNECDMEPTLLISLTAPKLCAKHFKGKHHFLGGRFVPPALQRKYELNLPTYPGNEMCLEL 229          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROWI (YjeF N-terminal domain-containing protein GK25285 OS=Drosophila willistoni GN=GK25285 PE=4 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I S+DIPSGW VE+G + D  ++P +L+SLTAPKLCAK F G +H+LGGRFVPP +  +Y+L LP YPGT +CV++
Sbjct:  157 QTKIPIASIDIPSGWDVEKGKLNDCELEPKLLISLTAPKLCAKHFKGQYHYLGGRFVPPALQRQYELNLPNYPGTELCVKL 237          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROSE (YjeF N-terminal domain-containing protein GM11335 OS=Drosophila sechellia GN=GM11335 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE+G + +  ++P +L+SLTAPKLCA++F G HH+LGGRFVPP +  KY+L LP YPG  +CV++
Sbjct:  150 QTKLPIASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARQFRGEHHYLGGRFVPPALQRKYELNLPVYPGNELCVKL 230          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROME (YjeF N-terminal domain-containing protein CG2974 OS=Drosophila melanogaster GN=CG2974 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE+G + +  ++P +L+SLTAPKLCA++F G HH+LGGRFVPP +  KY+L LP YPG  +CV++
Sbjct:  150 QTKLPIASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARQFRGEHHYLGGRFVPPALQRKYELNLPVYPGNELCVKL 230          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROER (YjeF N-terminal domain-containing protein GG18945 OS=Drosophila erecta GN=GG18945 PE=4 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE+G + +  ++P +L+SLTAPKLCA++F G HH+LGGRFVPP +  KY+L LP YPG  +CV++
Sbjct:  150 QTKLPIASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARQFRGEHHYLGGRFVPPALQRKYELNLPVYPGNELCVKL 230          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROYA (YjeF N-terminal domain-containing protein GE15417 OS=Drosophila yakuba GN=GE15417 PE=4 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   76 QKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            Q +  I SVDIPSGW VE+G + +  ++P +L+SLTAPKLCA+ F G HH+LGGRFVPP +  KY L LP YPG  +CV++
Sbjct:  150 QTKLPIASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARHFRGEHHYLGGRFVPPALQRKYGLNLPTYPGNELCVKL 230          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: AIBP_HUMAN (Apolipoprotein A-I-binding protein OS=Homo sapiens GN=APOA1BP PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I S+DIPSGW VE+G+ G  GI+PD+L+SLTAPK  A +F+G +H+LGGRFVPP +  KY+L LPPYP T    R+
Sbjct:  214 IASIDIPSGWDVEKGNAG--GIQPDLLISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287          
The following BLAST results are available for this feature:
BLAST of FC929944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YJEFN_DROVI6.141e-2459.26YjeF N-terminal domain-containing protein GJ19543 ... [more]
YJEFN_DROGR1.048e-2359.26YjeF N-terminal domain-containing protein GH12525 ... [more]
YJEFN_DROAN1.787e-2357.89YjeF N-terminal domain-containing protein GF19489 ... [more]
YJEFN_DROMO2.334e-2359.26YjeF N-terminal domain-containing protein GI11178 ... [more]
YJEFN_DROWI3.981e-2356.79YjeF N-terminal domain-containing protein GK25285 ... [more]
YJEFN_DROSE5.199e-2356.79YjeF N-terminal domain-containing protein GM11335 ... [more]
YJEFN_DROME5.199e-2356.79YjeF N-terminal domain-containing protein CG2974 O... [more]
YJEFN_DROER5.199e-2356.79YjeF N-terminal domain-containing protein GG18945 ... [more]
YJEFN_DROYA1.513e-2256.79YjeF N-terminal domain-containing protein GE15417 ... [more]
AIBP_HUMAN1.416e-2059.21Apolipoprotein A-I-binding protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC34002B03EF PostHarvC1 Citrus clementina cDNA clone C34002B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929944 ID=FC929944; Name=FC929944; organism=Citrus clementina; type=EST; length=587bp
CATGGAACCCCAAGGCCACCGTCTGATGATCTGATTAAGAGACTGCTTTG
TCTACATGGTTATGATCAAACACACCAAAAACGCCCAGTTATTGTCTCTG
TAGATATTCCATCTGGTTGGCACGTTGAAGAAGGGGATATTGGGGATGAA
GGCATAAAACCAGACATGCTGGTTTCTTTAACTGCTCCCAAACTGTGTGC
AAAGAAATTCAGTGGTCCTCACCACTTTCTAGGTGGTCGATTTGTCCCAC
CGGTCATTGCAGATAAATATAAGCTTCGTCTTCCACCTTATCCTGGTACT
TCAATGTGTGTACGAATTGGAAAGGCACCAAGCGTTGATATATCAGCTCT
ACGAGAGAATTATATTTCTCCAGAATTCCTTGAGGAGCAAGTTGAATCTG
ACCCCATTAATCAGTTTCGGAAATGGTTTGATGATGCAATTGCTGCAGGA
TTGAGGGAACCAAATGCAATGGCTTTATCAACTGTTGGCAAGGATGGAAA
ACCGTACTTTCTATTCTTTTGATTTCTTTTTCATTCATCAACAANATTAT
GTTCAGTAGATTCATCTGAATTTGCATCTTGTCATTT
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