FC929946

Overview
NameFC929946
Unique NameFC929946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929946 vs. ExPASy Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   31 EEKINSERSTKRFKSKTMKNNSFIAPINNLDDGCLMHVFSFLSPIPDGITWHVILAC------GCG*ISLLRISQSQEFSPTLRQPYLW-QVDSKLT*GVAAN**IWIN------SDLW*NCVR*WVGGGELPDETTLICSRGSDRFVNFL 444
            + K + ER  +    K MK  S +  +NNLDDGCLMH+ SFLSPIPD   ++  L C       C     LR+ +   F   L QP ++  ++S ++     +  + +       S++        VGGGE+PDETTL+C+RGSD  +  L
Sbjct:   10 DNKKHPERIVESKMKKRMKPYS-LTSLNNLDDGCLMHILSFLSPIPD--RYNTALVCHRWRYLACHPRLWLRVDR---FVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDETTLVCARGSDSALELL 154          
The following BLAST results are available for this feature:
BLAST of FC929946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKIP5_ARATH6.816e-1135.10F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionC34002B05EF PostHarvC1 Citrus clementina cDNA clone C34002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929946 ID=FC929946; Name=FC929946; organism=Citrus clementina; type=EST; length=724bp
GGACTTGGAGTTTGTGAACAAACGGAAGATGAAGAGAAGATAAACAGTGA
ACGAAGTACTAAACGATTCAAAAGCAAAACTATGAAAAATAATTCTTTTA
TTGCTCCAATAAACAATCTTGATGATGGCTGCCTTATGCACGTATTCAGC
TTCTTATCCCCAATTCCAGATGGAATTACTTGGCATGTCATCCTCGCTTG
TGGCTGCGGGTAGATCAGTCTGTTAAGGATCTCTCAGAGCCAGGAGTTTT
CCCCGACCTTAAGACAGCCGTATCTGTGGCAAGTTGATTCAAAGTTGACC
TGAGGCGTTGCCGCCAACTAATGAATTTGGATTAACTCTGACTTGTGGTA
GAACTGTGTGAGGTGATGGGTCGGAGGAGGTGAGCTTCCTGATGAAACAA
CCCTTATCTGTTCTCGAGGTTCGGACAGGTTTGTGAATTTTCTGGTTTTT
ATTTCAGATTAAGTTATACTGTTTTGTGGAGATTAATTACAATTACATGA
GGACCCTTTCATATTGTTGGATTTTACAGAAGATACCTTTAATAGGAGTG
ACACTTTAATTCAACAGACTTTATGCATGGTTCACAGGTAGATATAATAA
ATCATCACATAAGATGAATTATTGTGATGTGCTGGCTGCTCTTTTTCAGA
TCTTGTTATATATTTTAGGTTGAGCTGTTTTATACCAGCCTCTTCTTTAG
ATTAGNTATTCAAAATATGAAGTA
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