FC929949

Overview
NameFC929949
Unique NameFC929949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13707 contig Ccv1_Contig13707:663..1368. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 447.203 bits (1149), Expect = 3.954e-125
Identity = 217/231 (93.94%), Postives = 229/231 (99.13%), Query Frame = 3
Query:    3 FLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALK 695
            FL M DLWVKHCGISHTGSFKDLGMTVLVSQVNRL+KM+KPV+GVGCASTGDTSAALSAYCASAG+PSIVFLPANKIS+AQLVQPIANGAFVLS+DTDFDGCMQLIREVT+ELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVP+WVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYL+YKSGWKDFKPV+ANTTFASAIQIGDPVSIDRAV+AL+
Sbjct:  176 FLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQ 406          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 441.425 bits (1134), Expect = 2.170e-123
Identity = 212/231 (91.77%), Postives = 228/231 (98.70%), Query Frame = 3
Query:    3 FLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYALK 695
            FL MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRL+KM +PV+GVGCASTGDTSAALSAYCASAG+PSIVFLPANKIS+AQLVQPIANGAFVLS+DTDFDGCM+LIRE+T+ELPIYLANSLNSLRLEGQKTAAIEILQQFDW+VPDWVIVPGGNLGNIYAFYKGF+MC+ELGLVDRIPR+VCAQAANANPLYL+YKSGWKDFKP+ A+TTFASAIQIGDPVSIDRAVYALK
Sbjct:  183 FLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALK 413          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 9.116e-122
Identity = 214/232 (92.24%), Postives = 228/232 (98.28%), Query Frame = 3
Query:    3 FLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWK-DFKPVRANTTFASAIQIGDPVSIDRAVYALK 695
            +LQMNDLWVKHCGISHTGSFKDLGM+VLVSQVNRL+KMNKPVIGVGCASTGDTSAALSAYCASAG+PSIVFLPA+KIS+AQLVQPIANGAFVLS+DTDFDGCM LIREVT+ELPIYLANSLNSLRLEGQKTAAIEILQQF+W+VPDWVIVPGGNLGNIYAFYKGF MCKELGLVDRIPRLVCAQAANANPLYL+YKSG+K DF P++ANTTFASAIQIGDPVSIDRAVYALK
Sbjct:  174 YLQMNDLWVKHCGISHTGSFKDLGMSVLVSQVNRLRKMNKPVIGVGCASTGDTSAALSAYCASAGIPSIVFLPADKISMAQLVQPIANGAFVLSIDTDFDGCMHLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKELGLVDRIPRLVCAQAANANPLYLHYKSGFKEDFNPLKANTTFASAIQIGDPVSIDRAVYALK 405          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_METJA (Probable threonine synthase OS=Methanocaldococcus jannaschii GN=thrC PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 101/229 (44.10%), Postives = 148/229 (64.63%), Query Frame = 3
Query:    6 LQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYAL 692
            L + +L+VK+ G + TGSFKD GMTV V++ N L      V  VGCASTG+TSA+L+AY A +G   IV LP  K+++ +L Q +  GA V+ +  +FD  + +++++  E  IYL NS+N  RLEGQKT A EI  Q +W+VPD VIVP GN GNI A +KGF+  +  G++D +P++   QA  A P+   ++   KD  P +   T A+AI+IG+PV+  +A+ A+
Sbjct:   87 LGIKELYVKNEGANPTGSFKDRGMTVGVTRANELG-----VEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDDALDMVKQLAKEKLIYLLNSINPFRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNISAIWKGFKEFEITGIIDELPKMTGIQADGAKPIVEAFRKRAKDIIPYKNPETIATAIRIGNPVNAPKALDAI 310          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_SYNY3 (Threonine synthase OS=Synechocystis sp. (strain PCC 6803) GN=thrC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.654e-39
Identity = 90/220 (40.91%), Postives = 136/220 (61.82%), Query Frame = 3
Query:   21 LWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRA 680
            ++VK+ G++ TGSFKD GMT+ +S+        K VI   CASTG+TSAA +AY   AG+ + V +P   +++ +L Q +  GA V+++D +FD  +  +R+++   P+ L NS+N  RLEGQKTAA EI+     + PDW+ +P GN GNI A++ GF   KELG  DR+PR++  QAA + P            +P+    T A+AI+IG+P + D+A
Sbjct:   79 VFVKYDGLNPTGSFKDRGMTMAISKAKEAGA--KAVI---CASTGNTSAAAAAYARRAGLRAFVIIPDGYVALGKLGQALIYGAEVIAIDGNFDDALTTVRQLSEHYPVTLVNSVNPYRLEGQKTAAFEIVDVLG-QAPDWLCIPVGNAGNITAYWMGFCQYKELGKGDRLPRMMGFQAAGSAPFI--------QGQPISHPETLATAIRIGNPANWDKA 284          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_MYCTU (Probable threonine synthase OS=Mycobacterium tuberculosis GN=thrC PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 93/218 (42.66%), Postives = 136/218 (62.39%), Query Frame = 3
Query:   39 GISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYA 689
            G++ TGSFKD GMT+ V+    L    + V+   CASTG+TSA+ +AY A AG+   V +P  KI++ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTAA EI+       PD   +P GN GNI A++KG+    +LGL+D++PR++  QAA A PL L         +PV    T A+AI+IG P S   AV A
Sbjct:   61 GLNPTGSFKDRGMTMAVTDA--LAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLG-TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVL--------GEPVSHPETIATAIRIGSPASWTSAVEA 264          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_MYCBO (Probable threonine synthase OS=Mycobacterium bovis GN=thrC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 93/218 (42.66%), Postives = 136/218 (62.39%), Query Frame = 3
Query:   39 GISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYA 689
            G++ TGSFKD GMT+ V+    L    + V+   CASTG+TSA+ +AY A AG+   V +P  KI++ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTAA EI+       PD   +P GN GNI A++KG+    +LGL+D++PR++  QAA A PL L         +PV    T A+AI+IG P S   AV A
Sbjct:   61 GLNPTGSFKDRGMTMAVTDA--LAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLG-TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVL--------GEPVSHPETIATAIRIGSPASWTSAVEA 264          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_MYCLE (Probable threonine synthase OS=Mycobacterium leprae GN=thrC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.541e-36
Identity = 91/218 (41.74%), Postives = 133/218 (61.01%), Query Frame = 3
Query:   39 GISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELP-IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYA 689
            G++ TGSFKD GMT+ V+    L +  + V+   CASTG+TSA+ +AY A AG+   V +P  KI++ +L Q + +GA ++ +D +FD C++L R++ ++ P I L NS+N +R+EGQKTA  EI+       P    +P GN GNI A++KG+      GL+DR+PR++  QAA A PL L         +PV    T A+AI+IG P S   AV A
Sbjct:   61 GLNPTGSFKDRGMTMAVTDA--LARGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPMISLVNSVNPVRIEGQKTAVFEIVDALG-TAPHVHALPVGNAGNITAYWKGYTEYHADGLIDRLPRMLGTQAAGAAPLVL--------GEPVSHPETIATAIRIGSPASWTSAVEA 264          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_BACSU (Threonine synthase OS=Bacillus subtilis GN=thrC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 85/224 (37.95%), Postives = 133/224 (59.38%), Query Frame = 3
Query:   18 DLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYA 689
            +L VK  G++ TGSFKD GM + V++    ++ N  ++   CASTG+TSAA +AY A A +  IV +P  KI+  +L Q +  GA ++++D +FD  ++++R +  + PI L NS+N  R+EGQKTAA E+ +Q   E PD + +P GN GNI A++KGF+   E      +P++   +A  A  +           + +    T A+AI+IG+P S D+AV A
Sbjct:   44 ELHVKTEGVNPTGSFKDRGMVMAVAKAK--EEGNDTIM---CASTGNTSAAAAAYAARANMKCIVIIPNGKIAFGKLAQAVMYGAEIIAIDGNFDDALKIVRSICEKSPIALVNSVNPYRIEGQKTAAFEVCEQLG-EAPDVLAIPVGNAGNITAYWKGFKEYHEKNGTG-LPKMRGFEAEGAAAIVRN--------EVIENPETIATAIRIGNPASWDKAVKA 252          
BLAST of FC929949 vs. ExPASy Swiss-Prot
Match: THRC_BACSL (Threonine synthase OS=Bacillus sp. (strain ULM1) GN=thrC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = 3
Query:   21 LWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGF-QMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKPVRANTTFASAIQIGDPVSIDRAVYA 689
            L+ K+ G + TGSFKD GM + V++    ++ ++ +I   CASTG+TSA+ +AY A  G+  I+ +P  KI+  +L Q +A GA ++S++ +FD  ++ +R + +E PI L NS+N  R+EGQKTAA EI  Q     PD + +P GN GNI A++KGF +  KE G   + PR+   +A  A  +   +         +    T A+AI+IG+P S   AV A
Sbjct:   45 LYGKYEGANPTGSFKDRGMVMAVAKAK--EEGSEAII---CASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSVNPYRIEGQKTAAFEICDQLQ-NAPDVLAIPVGNAGNITAYWKGFCEYEKEKGY--KKPRIHGFEAEGAAAIVKGH--------VIEEPETIATAIRIGNPASWSYAVEA 252          
The following BLAST results are available for this feature:
BLAST of FC929949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THRC_SOLTU3.954e-12593.94Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC1_ARATH2.170e-12391.77Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC2_ARATH9.116e-12292.24Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
THRC_METJA4.324e-4744.10Probable threonine synthase OS=Methanocaldococcus ... [more]
THRC_SYNY39.654e-3940.91Threonine synthase OS=Synechocystis sp. (strain PC... [more]
THRC_MYCTU2.809e-3842.66Probable threonine synthase OS=Mycobacterium tuber... [more]
THRC_MYCBO2.809e-3842.66Probable threonine synthase OS=Mycobacterium bovis... [more]
THRC_MYCLE1.541e-3641.74Probable threonine synthase OS=Mycobacterium lepra... [more]
THRC_BACSU1.350e-3237.95Threonine synthase OS=Bacillus subtilis GN=thrC PE... [more]
THRC_BACSL9.677e-3138.39Threonine synthase OS=Bacillus sp. (strain ULM1) G... [more]

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Properties
Property NameValue
Genbank descriptionC34002B08EF PostHarvC1 Citrus clementina cDNA clone C34002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929949 ID=FC929949; Name=FC929949; organism=Citrus clementina; type=EST; length=704bp
AGTTTTTGCAAATGAATGATTTGTGGGTTAAGCACTGTGGGATTAGTCAT
ACAGGAAGTTTTAAGGATCTGGGTATGACTGTTTTGGTGAGTCAAGTGAA
TAGGTTAAAGAAAATGAACAAACCGGTTATTGGGGTTGGCTGTGCTTCAA
CTGGCGATACCTCAGCTGCTCTGTCAGCTTATTGTGCCTCTGCTGGCGTT
CCTTCTATTGTGTTTTTGCCCGCTAATAAGATTTCAATTGCCCAGTTAGT
GCAGCCTATTGCAAATGGTGCTTTTGTTTTGAGTCTTGATACTGATTTTG
ATGGCTGCATGCAGTTGATAAGGGAAGTTACTTCTGAGTTGCCTATTTAT
TTAGCTAATTCTTTGAATAGTTTGAGGTTAGAGGGACAAAAGACTGCTGC
TATTGAGATATTGCAGCAGTTTGATTGGGAAGTTCCCGATTGGGTGATAG
TTCCTGGTGGTAATTTGGGAAATATATATGCTTTTTATAAAGGGTTTCAA
ATGTGCAAAGAGTTAGGGCTTGTTGATAGGATTCCTCGGCTTGTATGTGC
ACAAGCTGCAAATGCAAACCCACTTTACTTGTATTATAAGTCAGGGTGGA
AAGATTTTAAGCCTGTCAGGGCAAATACTACTTTTGCATCTGCTATTCAG
ATTGGTGATCCTGTTTCTATTGACAGAGCTGTTTATGCCTTGAAAATTGT
GATG
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