FC929953

Overview
NameFC929953
Unique NameFC929953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC929953 vs. ExPASy Swiss-Prot
Match: UGPI6_ARATH (Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.782e-81
Identity = 144/237 (60.76%), Postives = 191/237 (80.59%), Query Frame = 2 
Query:    2 LAPFTNSTVPKLSGHCLLNFTAAESLMSMTSIDCHAVFAPLLANVVCCPQLEATILILIGQSSRKTNMLALNGTLAEHCLSDFEQILVGQGAADDLKKICSINASNLTEASCPVKDVNEFESTVDSSKLLAACEKVDPVKECCDQICQNAILEAATKIAMKASDPLNMEGHNVLSDHSTRINDCKSIVLRWLGSKLDPSRSKEVLRGLSNCNVNKVCPLSFP-AQTLSKSCGEYISN 709
            + P+ NST+PKLSG C LNF+A+ESL+  TS +C  VFAPLLANV+CCPQL+AT+ I++G++S++T +LALN T ++HCLSD EQILVG+GA+  L KICSI++SNLT +SCPV +V+EFESTVD++KLL ACEK+DPVKECC++ CQNAIL+AAT I++KAS+         L+D+S RINDCK++V RWL +KLDPSR KE LRGL+NC +N+VCPL FP  + +  +C   +SN
Sbjct:   54 MVPYINSTMPKLSGLCSLNFSASESLIQTTSHNCWTVFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGASGQLNKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILDAATNISLKASE--------TLTDNSDRINDCKNVVNRWLATKLDPSRVKETLRGLANCKINRVCPLVFPHMKHIGGNCSNELSN 282
The following BLAST results are available for this feature:
BLAST of FC929953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI6_ARATH2.782e-8160.76Uncharacterized GPI-anchored protein At1g61900 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34002C01EF PostHarvC1 Citrus clementina cDNA clone C34002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929953 ID=FC929953; Name=FC929953; organism=Citrus clementina; type=EST; length=723bp
CTTGGCACCCTTCACGAATAGCACTGTCCCTAAATTATCAGGACACTGTT
TGCTAAACTTTACTGCAGCTGAAAGCTTGATGAGCATGACTTCAATTGAT
TGCCATGCTGTGTTCGCCCCATTGTTGGCCAATGTTGTGTGCTGTCCGCA
GCTAGAGGCCACTATTCTGATTCTCATTGGTCAATCCAGTAGAAAAACTA
ATATGCTTGCTTTAAATGGGACGCTTGCCGAGCACTGCCTCTCTGATTTT
GAGCAGATTCTGGTGGGCCAGGGTGCTGCTGATGATCTGAAGAAGATATG
CTCAATTAATGCATCAAACCTCACTGAGGCATCTTGCCCAGTCAAGGATG
TTAATGAATTTGAGAGCACTGTGGATTCTTCTAAGCTTCTTGCTGCCTGT
GAGAAGGTTGATCCTGTAAAAGAATGTTGTGACCAAATTTGTCAGAATGC
AATATTAGAAGCTGCTACCAAAATTGCGATGAAAGCCTCGGATCCTTTGA
ACATGGAAGGGCACAATGTTTTATCCGACCACTCAACCAGGATTAATGAT
TGCAAAAGCATTGTCCTCCGGTGGCTGGGAAGTAAACTTGATCCCTCTCG
TTCCAAGGAAGTTCTAAGAGGACTATCTAATTGCAACGTCAATAAAGTTT
GCCCTTTGTCTTTCCCAGCACAAACACTTAGCAAGAGCTGTGGGGAATAT
ATAAGTAACCATCCGCTTGCTGT
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