FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:36..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH1_ARATH (Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 8.561e-91
Identity = 172/225 (76.44%), Postives = 193/225 (85.78%), Query Frame = 2
Query:   47 MVMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASA-SDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            M MASLARRKAY             + ++SFSL+RGFAS+ SDEND            AAIKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEVDLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYG+FISP+EVSV+TI+GGNT+VKGK+II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPK+L+VIGAGY
Sbjct:    1 MAMASLARRKAYFLTRNLSNSPTDAL-RFSFSLSRGFASSGSDENDVVIIGGGPGGYVAAIKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGY 224          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_PEA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.236e-89
Identity = 172/225 (76.44%), Postives = 187/225 (83.11%), Query Frame = 2
Query:   47 MVMASLARRKAYVXXXXXXXXXXXXVFKYSFSL-TRGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            M MA+LARRK Y               +YSFSL +R FAS SDEND            AAIKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVK S+VE+DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYG+F+SPSE+SVDTIEG NTVVKGK+IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PK+LVVIGAGY
Sbjct:    1 MAMANLARRKGY-------SLLSSETLRYSFSLRSRAFASGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGY 218          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH2_ARATH (Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.614e-89
Identity = 171/225 (76.00%), Postives = 188/225 (83.56%), Query Frame = 2
Query:   47 MVMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASA-SDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            M MASLARRKAY              F++SFSLTRGFAS+ SD+ND            AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEVDLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYG+F+SPSEVSVDTI+G N VVKGK+II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PK+L+VIGAGY
Sbjct:    1 MAMASLARRKAYFLTRNISNSPTD-AFRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGY 224          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_SCHPO (Dihydrolipoyl dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=dld1 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.093e-53
Identity = 108/187 (57.75%), Postives = 130/187 (69.52%), Query Frame = 2
Query:  158 ASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AS + E D            AAI+ AQLGLKT C+EKRG LGGTCLNVGCIPSKALL++SH+YH   H     G+  S V V+L  MM  KD +V +LT GIE LFKKNKV Y KG G FI P  +SV  I+G  +  +K KN IIATGS+VK  PG+TIDEK+IVSSTGAL+L+EVPK++ V+G G
Sbjct:   40 ASGNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCLNVGCIPSKALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYAKGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPFPGVTIDEKKIVSSTGALSLSEVPKKMTVLGGG 226          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_DICDI (Dihydrolipoyl dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=lpd PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.180e-53
Identity = 104/166 (62.65%), Postives = 126/166 (75.90%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            A IKA QLG+K T +EKRG LGGTCLNVGCIPSKALL++SH+Y EA    + +GVK S VE+DL AMM  KDK+VS LT GIEGLFKKNKV Y KG+G+   P+ V V   +G    ++ KNI+IATGS+V SLP + IDE+ I+SSTGALAL  VPK+L+VIG G
Sbjct:   37 AGIKAGQLGMKVTVVEKRGKLGGTCLNVGCIPSKALLNASHLYEEATTKMSKYGVKCSGVELDLGAMMQYKDKSVSGLTSGIEGLFKKNKVKYDKGFGKITGPNTVEVTLNDGSVKTIETKNIVIATGSEVTSLPNVNIDEESIISSTGALALKSVPKKLIVIGGG 202          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_TRYBB (Dihydrolipoyl dehydrogenase OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.332e-50
Identity = 98/167 (58.68%), Postives = 129/167 (77.25%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLGLKT C+EKRGALGGTCLNVGCIPSKALLH++HMYH+A  +F  +G+   + V +D+  M  QK+K+V+ LT G+E L KKNKVTY KG   F++P+ ++V  I+G +  ++ KN IIATGS+  +LP +  DEK ++SSTGALAL +VPK++VVIG G
Sbjct:   26 AAIKAAQLGLKTACVEKRGALGGTCLNVGCIPSKALLHATHMYHDAHANFERYGLMGGAGVTMDVAKMQQQKEKSVNGLTSGVEYLLKKNKVTYYKGEAGFVTPNTLNVKGIDGKDEAIEAKNTIIATGSEPTALPFLPFDEKVVLSSTGALALQQVPKKMVVIGGG 192          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_MACFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.639e-49
Identity = 101/167 (60.48%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV +V GYG+    ++V+   ++GG  VV  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+++VVIGAG
Sbjct:   56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVIHVNGYGKITGKNQVTATKVDGGTQVVDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_HUMAN (Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.106e-49
Identity = 101/167 (60.48%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV +V GYG+    ++V+    +GG  V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+++VVIGAG
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_PONAB (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.254e-48
Identity = 99/167 (59.28%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV +V GYG+    ++V+    +GG  V+  KNI+IATGS+V   PGI IDE  IVSSTGAL+L +VP+++VVIGAG
Sbjct:   56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGIMIDEDTIVSSTGALSLKKVPEKMVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_CANFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Canis familiaris GN=DLD PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.254e-48
Identity = 99/167 (59.28%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV +V GYG+    ++V+    +G   V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+++VVIGAG
Sbjct:   56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAG 222          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
DLDH1_ARATH8.561e-9176.44Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Ar... [more]
DLDH_PEA1.236e-8976.44Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisu... [more]
DLDH2_ARATH1.614e-8976.00Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Ar... [more]
DLDH_SCHPO1.093e-5357.75Dihydrolipoyl dehydrogenase, mitochondrial OS=Schi... [more]
DLDH_DICDI3.180e-5362.65Dihydrolipoyl dehydrogenase, mitochondrial OS=Dict... [more]
DLDH_TRYBB7.332e-5058.68Dihydrolipoyl dehydrogenase OS=Trypanosoma brucei ... [more]
DLDH_MACFA3.639e-4960.48Dihydrolipoyl dehydrogenase, mitochondrial OS=Maca... [more]
DLDH_HUMAN8.106e-4960.48Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo... [more]
DLDH_PONAB5.254e-4859.28Dihydrolipoyl dehydrogenase, mitochondrial OS=Pong... [more]
DLDH_CANFA5.254e-4859.28Dihydrolipoyl dehydrogenase, mitochondrial OS=Cani... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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