FC929960

Overview
NameFC929960
Unique NameFC929960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11292 contig Ccv1_Contig11292:1043..1743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929960 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.569e-72
Identity = 128/183 (69.95%), Postives = 157/183 (85.79%), Query Frame = 1
Query:    4 IIRNAKSGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 552
            ++ N+++GE LTRATS+WVMMNKLTRRLSK+P+EVR EIEP+F+NSDPV+ EDS+KL KL DSTA++V +GLTP+WSDLDVNQHVNNVKYIGWILESAP  ILESH+L+++TLEYRRECGRDSVLQSLT VSD +  N VN+G   CQHLLRL++GAE++R RT WRPK A +  N+  I A+
Sbjct:  229 LVSNSETGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVLAEDSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNVGEFNCQHLLRLDDGAEIVRGRTRWRPKHAKSSANMDQITAK 411          
BLAST of FC929960 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.382e-60
Identity = 110/170 (64.71%), Postives = 141/170 (82.94%), Query Frame = 1
Query:    4 IIRNAKSGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKD 513
            +I +  +GE LTRA+S+WVMMN+ TRRLSK+PDEVR EIEP+F++S PV+++D RKLPKL + TAD +R+GLTPRW+DLDVNQHVNNVKYIGWILES P ++LE+ +L S+TLEYRRECGR+SVL+SLTA+     G     GS + QHLLRLE+G E+++ RTEWRPK+
Sbjct:  233 LISDCNTGEILTRASSVWVMMNQKTRRLSKIPDEVRNEIEPHFVDSPPVIEDDDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTAMDPSGGG----YGS-QFQHLLRLEDGGEIVKGRTEWRPKN 397          
BLAST of FC929960 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.796e-57
Identity = 111/185 (60.00%), Postives = 139/185 (75.14%), Query Frame = 1
Query:    4 IIRNAKSGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAEST 558
            ++R+ K+GE LTR TSL VMMN  TRRLSK+P+EVR EI P F+++  V DE+ +K  KL DSTADY++ GLTPRW+DLD+NQHVNN+KY+ WILE+ P  I ESH ++S T+EYRREC  DSVLQSLT VS    G     G V C+HLL+LE G+EVLRA+TEWRPK   +F  +  IPAES+
Sbjct:  202 LVRDCKTGEILTRCTSLSVMMNTRTRRLSKIPEEVRGEIGPAFIDNVAVKDEEIKKPQKLNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS----GGSSEAGLV-CEHLLQLEGGSEVLRAKTEWRPKLTDSFRGISVIPAESS 381          
BLAST of FC929960 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.869e-56
Identity = 110/183 (60.11%), Postives = 136/183 (74.32%), Query Frame = 1
Query:    4 IIRNAKSGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 552
            ++R+ K+GE LTR TSL V+MN  TRRLS +PDEVR EI P F+++  V D++ +KL KL DSTADY++ GLTPRW+DLDVNQHVNN+KY+ W+ E+ P  I ESH ++S TLEYRREC RDSVL+SLT VS    G     G V C HLL+LE G+EVLRARTEWRPK   +F  +  IPAE
Sbjct:  202 LVRDCKTGEILTRCTSLSVLMNTRTRRLSTIPDEVRGEIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTTVS----GGSSEAGLV-CDHLLQLEGGSEVLRARTEWRPKLTDSFRGISVIPAE 379          
BLAST of FC929960 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.680e-32
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = 1
Query:    4 IIRNAKSGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV--DEDSRKLPKLG--DSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVS-DKDIGNLVNLG--------------SVECQHLLRLE-EGAEVLRARTEWRPK 510
            II++  + E + RATS WVMMN+ TRRL K+ D+VR E   +   +  +   +E+++ L K+   +  A + R GL+PR +DLD+NQHVNNV YIGW+LES P+++L +H+L ++TL+YRREC  D V+ SLT+   D+D      +G              S++  H LR+  +G E+ R RTEWR K
Sbjct:  177 IIKDFATDEVIGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTSPEVDEDTAVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRGRTEWRKK 365          
The following BLAST results are available for this feature:
BLAST of FC929960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATB_GOSHI6.569e-7269.95Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO3.382e-6064.71Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CINCA7.796e-5760.00Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA3.869e-5660.11Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
FATA_CORSA8.680e-3241.80Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC34002C08EF PostHarvC1 Citrus clementina cDNA clone C34002C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929960 ID=FC929960; Name=FC929960; organism=Citrus clementina; type=EST; length=701bp
AGGATCATTCGCAATGCTAAGTCCGGTGAAACATTAACAAGAGCAACCAG
TCTGTGGGTAATGATGAATAAACTGACTAGGAGGTTGTCCAAAATGCCCG
ATGAAGTTCGTCAGGAAATTGAACCGTATTTTCTGAATTCTGACCCTGTT
GTCGATGAGGATAGCAGGAAATTACCAAAACTTGGCGACAGTACTGCAGA
TTATGTTCGTAGAGGTTTAACTCCTAGGTGGAGTGATTTAGATGTCAACC
AGCATGTCAATAATGTGAAGTACATTGGCTGGATCCTAGAGAGTGCTCCT
CAGCAGATCTTGGAGAGTCATCAGCTGGCATCTGTGACCCTGGAGTATAG
GAGGGAGTGCGGAAGGGACAGTGTGTTGCAGTCCCTGACTGCTGTCTCAG
ACAAGGACATTGGCAATTTGGTGAACTTGGGCAGTGTGGAGTGCCAGCAC
TTGCTCCGACTAGAGGAAGGTGCTGAAGTTTTGAGAGCAAGGACTGAATG
GAGGCCAAAGGATGCCCACAACTTTGGGAATGTTGGTCCAATCCCTGCAG
AAAGCACTTAAAACCCAAGTTTCTCGGAGATGCGGTGGTCGCGCGGCCGT
GTGTCACATTGCTCGTGTAGAATGCTGTGTGCTCTTGGATCTATATATGT
TCGCTTATATATTTAAAAATATATATCTATATACACATATCTTATTCATC
T
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