FC929961

Overview
NameFC929961
Unique NameFC929961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.031e-32
Identity = 70/169 (41.42%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  175 LGMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCF--GLYGYAAFGGCPLTWSGFSTQAFSGLW 675
            LGMASA++T+CGQA+GA++Y  +GI  QR+ ++              + P+LK +GQ   +A      A  MIP  ++FA   P+ RFLQ Q     +A++SL   L++ L +WL   VLDFG++GAAL L  SWW+L    G+Y       C  TW+GFST+AF G+W
Sbjct:  107 LGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMY-ILMSPNCKETWTGFSTRAFRGIW 274          

HSP 2 Score: 31.187 bits (69), Expect = 3.031e-32
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVIVGFNFGLLV 92
            F GHLG ++LA  SIA   I G  +G+++
Sbjct:   79 FTGHLGSLQLAGASIATVGIQGLAYGIML 107          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.812e-14
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIP-LHFSFAFQFPLTRFLQCQ--LKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPL-TWSGFSTQAF 663
            G+ASA +TL  Q+FG K    +G+ +QR  ++                 LL LL Q  DVA L+    +  IP L  +F FQ   TR+LQ Q  +  QVI  V +   +VNV  +   +Y LD GVVG+A A   S + L   L+ Y  +    + TW G++ + F
Sbjct:  100 GLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQ-TRYLQSQGIIMPQVI--VGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECF 262          

HSP 2 Score: 27.335 bits (59), Expect = 9.812e-14
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVI 65
            F GHLG VEL A+++A +V+
Sbjct:   71 FCGHLGKVELDAVTLAVSVV 90          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVY--VLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGL 672
            G+ S+L+TL  QAFGA + + + IY+QR  ++                 +L  L Q   VA L G      I     +A    L R+LQ Q     I +V      +N+L ++L V+   + FG +GA +A+  ++W     L  Y  F   P+ W GFS QA   L
Sbjct:  147 GVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSSTPIPWPGFSRQALKNL 313          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: YD338_YEAST (Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae GN=YDR338C PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVY--VLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFS 666
            G+A++L+TLC QA+G+ R++ +G+++QR                  + PLL  +    ++  L+      +I    ++ F   L RFLQ Q       +V  +   +NVL S+  V+   +  G +GAA+A+ +++W++ F L  YA +      W GFS +AF+
Sbjct:  284 GIATSLDTLCPQAYGSGRFYSVGVHLQRCIAFSLVIYIPFAVMWWYSEPLLSYIIPEKELINLTSRFLRVLILGAPAYIFFENLKRFLQAQGIFDAGIYVLTICAPLNVLVSYTLVWNKYIGVGFIGAAIAVVLNFWLMFFLLLFYALYIDGRKCWGGFSRKAFT 448          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGT-VAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLV----GLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGC-PLTWSGFS 651
            G+ASA +TL  Q FG+     +G+ +QR  ++                P+L  + Q  +VA LS   V ++M  L  +F +Q    R+LQ    NQ I W  ++    G ++N L +++F+++L+ GV G+A A  IS + L   LY Y  +      TW G+S
Sbjct:  109 GLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQ-GRYLQ----NQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWS 267          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.073e-11
Identity = 53/170 (31.18%), Postives = 78/170 (45.88%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLK---NQVIAWVSLV----GLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPL---TWSGFSTQ 657
            G++SA +TL  Q +G++    +G+ +QRS +V                 +L L  Q  DV+ L+ T     IP         P T     Q+K   NQ I    +V      LVN L ++LF++ L  GV+G+ALA  IS + L   L+ Y    G  L   TW G+S +
Sbjct:   91 GLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPA-------LPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYIL--GKKLHQATWGGWSLE 251          

HSP 2 Score: 27.7202 bits (60), Expect = 3.073e-11
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVI----VGFNFGL 86
            F GHLG +EL A+++A  VI    V   FGL
Sbjct:   62 FCGHLGKLELDAVTLAIAVINVTGVSVGFGL 92          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.988e-11
Identity = 45/166 (27.11%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIP-LHFSFAFQFPLTRFLQCQ--LKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPL-TWSGFSTQAF 663
            G+A A +TL  Q FG     ++GI +QR  ++                 +L L  Q  +V++L+    +  +P L  +F +Q  L ++LQ Q  +  QV+     +  + N L +++ +YVL  GV+G+A A  +S ++    L+ Y  +      TW G+S   F
Sbjct:  105 GLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQL-LAKYLQNQGIIYPQVL--TGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACF 267          

HSP 2 Score: 30.0314 bits (66), Expect = 3.988e-11
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVI 65
            F GHLG VEL A+S+A T+I
Sbjct:   76 FCGHLGKVELDAVSLAITII 95          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.721e-11
Identity = 51/170 (30.00%), Postives = 77/170 (45.29%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLK---NQVIAWVSLV----GLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPL---TWSGFSTQ 657
            G++SA +TL  Q +G++    +G+ +QRS ++                 +L L  Q  DV+ L+ T     IP         P T     Q+K   NQ I    +V      LVN L ++LF++ L  G +G+ALA  IS + L   L+ Y    G  L   TW G+S +
Sbjct:   91 GLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPA-------LPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYIL--GKKLHQATWGGWSLE 251          

HSP 2 Score: 27.7202 bits (60), Expect = 8.721e-11
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVI----VGFNFGL 86
            F GHLG +EL A+++A  VI    V   FGL
Sbjct:   62 FCGHLGKLELDAVTLAIAVINVTGVSVGFGL 92          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 8.722e-11
Identity = 45/162 (27.78%), Postives = 77/162 (47.53%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGL---LVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGC-PLTWSGFS 651
            G++SA +TL  Q +G++    +G+ +QR  ++                 +L L  Q  DV+ L+ T  +  IP   +    F  T  ++  L   ++    + G+   LVN L +++F+Y L  GV+G+ALA  IS + L   L+ Y  +      TW G+S
Sbjct:   91 GLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIP---ALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWS 249          

HSP 2 Score: 26.1794 bits (56), Expect = 8.722e-11
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVI 65
            F GHLG +EL A+++A  VI
Sbjct:   62 FCGHLGKLELDAVTLAIAVI 81          
BLAST of FC929961 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.724e-11
Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  178 GMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPDDVAELSGTVAVWMIP-LHFSFAFQFPLTRFL-QCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGC-PLTWSGFS 651
            G++SA +TL  Q +G++    +G+ +QR  ++                 +L L  Q  DV+ L+ T  +  IP L  +F +   +   L Q  +  QVI  ++    LVN L ++LF++ L  GV+G+ALA  IS + L   L+ Y  +      TW G+S
Sbjct:   90 GLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIA--ANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWS 248          

HSP 2 Score: 26.1794 bits (56), Expect = 8.724e-11
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:    6 FAGHLGDVELAAISIANTVI 65
            F GHLG +EL A+++A  VI
Sbjct:   61 FCGHLGKLELDAVTLAIAVI 80          
The following BLAST results are available for this feature:
BLAST of FC929961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TT12_ARATH3.031e-3241.42Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A2_MOUSE9.812e-1434.34Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
YL47_SCHPO2.472e-1230.54Uncharacterized transporter C323.07c OS=Schizosacc... [more]
YD338_YEAST7.194e-1228.48Uncharacterized transporter YDR338C OS=Saccharomyc... [more]
S47A1_DANRE1.603e-1131.10Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A1_HUMAN3.073e-1131.18Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_XENTR3.988e-1127.11Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_PONAB8.721e-1130.00Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_MOUSE8.722e-1127.78Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RAT8.724e-1129.81Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
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Properties
Property NameValue
Genbank descriptionC34002C09EF PostHarvC1 Citrus clementina cDNA clone C34002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929961 ID=FC929961; Name=FC929961; organism=Citrus clementina; type=EST; length=680bp
AAGCCTTTGCTGGCCACCTTGGCGATGTTGAGCTCGCTGCCATCTCTATA
GCCAACACAGTCATTGTTGGGTTCAATTTTGGCCTTTTGGTAATCACTAT
TACGAAGGTTATTATTAATTTTCTCTTTATTACAATAATTAGGTAGCTAG
CTAATCAAAGCTATAATTGAATAGTTGGGAATGGCGAGCGCACTAGAGAC
ACTTTGTGGGCAAGCATTTGGAGCCAAAAGGTACCACATGTTGGGCATAT
ACATGCAAAGATCATGGATAGTCCTTTTTCTATTCTGCTTCTTGTTGCTG
CCGTTTTACGTATTTGCCACCCCGCTTCTGAAATTACTGGGGCAGCCCGA
TGACGTGGCGGAGCTGTCGGGGACAGTGGCTGTGTGGATGATACCACTGC
ATTTTAGCTTTGCGTTTCAGTTTCCGTTGACAAGGTTCCTGCAGTGCCAG
CTGAAAAATCAAGTGATAGCGTGGGTTTCACTCGTGGGCTTGTTGGTGAA
TGTTCTGACGAGTTGGCTATTCGTTTATGTTCTAGATTTTGGTGTTGTTG
GTGCGGCGCTGGCTCTCGATATTTCTTGGTGGGTTTTGTGTTTTGGGCTT
TATGGATACGCTGCTTTCGGCGGCTGCCCTCTAACTTGGTCAGGTTTCTC
GACGCAAGCATTTTCTGGCCTCTGGGAATA
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