FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_ARATH (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.074e-85
Identity = 158/219 (72.15%), Postives = 181/219 (82.65%), Query Frame = 1
Query:   55 MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIF-IEKGM 708
            MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A +ID++NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+NGNKMWCTNGP A+TLVVYAKTD K   +  + F IEKGM
Sbjct:    1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGM 218          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD2_SOLTU (Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.097e-81
Identity = 151/201 (75.12%), Postives = 167/201 (83.08%), Query Frame = 1
Query:  109 QKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIF-IEKGM 708
            QK   A  STSLLFDDTQ QFKESV QFA+ENIAP A KID++N FPQDVNLWKLMG+FNL GIT P+E          HCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK KYLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVYAKTD+  + +  + F IEKGM
Sbjct:   10 QKPQFAAFSTSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVYAKTDVTASSKGITAFIIEKGM 210          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD1_SOLTU (Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.027e-80
Identity = 149/223 (66.82%), Postives = 175/223 (78.48%), Query Frame = 1
Query:   55 MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIF-IEKGMP 711
            M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A KID++NSFP+++NLWKLMG+FNLHGITAP+E          HCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++NGNKMWCTNGPVA TL+VYAKTD     +  + F IEK MP
Sbjct:    1 MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEKIDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMP 222          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_PONAB (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.049e-56
Identity = 108/189 (57.14%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  154 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGMP 711
            + Q Q +++V +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+     +  I    +EKGMP
Sbjct:   44 EEQRQLRQTVAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMP 232          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_HUMAN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.791e-56
Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  154 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGMP 711
            + Q Q ++++ +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+     +  I    +EKGMP
Sbjct:   44 EEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMP 232          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_MOUSE (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.371e-55
Identity = 105/190 (55.26%), Postives = 135/190 (71.05%), Query Frame = 1
Query:  151 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGMP 711
            ++ Q Q + ++ +F +EN+AP+A +IDQ+N F      WK +G+  + GITAP +          H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+     +  I    +EKGMP
Sbjct:   44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGITAFIVEKGMP 233          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_BOVIN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.807e-55
Identity = 105/190 (55.26%), Postives = 135/190 (71.05%), Query Frame = 1
Query:  151 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGMP 711
            ++ Q Q +++V +F +E++AP+A +IDQSN F      WK +GN  + GITAP +          + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+     +  I    +EKGMP
Sbjct:   46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRGITAFIVEKGMP 235          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_RAT (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.867e-54
Identity = 104/190 (54.74%), Postives = 133/190 (70.00%), Query Frame = 1
Query:  151 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGMP 711
            ++ Q Q + ++ +F +EN+AP+A +IDQSN F      WK +G+  + GITAP +          H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+     +  I    +EK MP
Sbjct:   44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRGITAFIVEKDMP 233          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 68/179 (37.99%), Postives = 103/179 (57.54%), Query Frame = 1
Query:  172 KESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIF-IEKG 705
            ++ V +FA   + P AA+ID++  FP + N+ K MG + + GI   +E          + IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNAG+D    +  A      Y+ING+K++ TNG VA T V++A TD     +  S F IEKG
Sbjct:   13 RQMVREFAENEVKPIAAEIDETERFPME-NV-KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFIIEKG 189          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.517e-26
Identity = 65/185 (35.14%), Postives = 106/185 (57.30%), Query Frame = 1
Query:  160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI-EKGMP 711
            Q+  ++ V  FAR+ IAP A  +++++ FP    L K MG   L GI  P++          + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++EP++GSD   ++  A + +G Y++NG+K++ TNG  A   + +A T     +   S FI EK  P
Sbjct:    7 QVMMRKMVRDFARKEIAPAAEIMEKTDEFP--FQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISAFIVEKNTP 189          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IVD_ARATH1.074e-8572.15Isovaleryl-CoA dehydrogenase, mitochondrial OS=Ara... [more]
IVD2_SOLTU2.097e-8175.12Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fra... [more]
IVD1_SOLTU3.027e-8066.82Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=S... [more]
IVD_PONAB3.049e-5657.14Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pon... [more]
IVD_HUMAN6.791e-5656.61Isovaleryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
IVD_MOUSE3.371e-5555.26Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
IVD_BOVIN9.807e-5555.26Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
IVD_RAT4.867e-5454.74Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rat... [more]
ACDS_CLOAB6.624e-2737.99Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDB_BACSU2.517e-2635.14Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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