FC929974

Overview
NameFC929974
Unique NameFC929974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929974_ssr499 microsatellite FC929974_ssr499:499..510. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15075 contig Ccv1_Contig15075:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.085e-77
Identity = 143/177 (80.79%), Postives = 157/177 (88.70%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE+  ++ RG
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEK--VLDRG 175          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.336e-51
Identity = 97/183 (53.01%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  164 LRNWKEMNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            LR  + M Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA ESVGR +P  FLERVK+DF +RYG                           A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KAQ+TEVKG+MM+NIE+  ++ RG
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQ-------------------ANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEK--VLDRG 221          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.888e-51
Identity = 96/177 (54.24%), Postives = 129/177 (72.88%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            M Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D+GF + VV  ES GR +P  FLERVK+DF +RYG    +                      A +L++EFG +LKEHMQYC  HPEE+SKLSK+KAQ+TEVKG+MM+NIE+  ++ RG
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAK-------------------ANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEK--VLDRG 156          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.133e-49
Identity = 93/177 (52.54%), Postives = 130/177 (73.45%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIE+  ++ RG
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEK--VLDRG 156          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 93/177 (52.54%), Postives = 129/177 (72.88%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++ GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIE+  ++ RG
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEK--VLDRG 156          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 85/177 (48.02%), Postives = 122/177 (68.93%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            M Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L+++GF + VVA +S GR +P  FLERVK+DF +RYG      +                    A +L++EFG  LKEHMQYCM HP+E+S L+K KAQ++EVK +MM+NIE+  ++ RG
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQ-------------------ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEK--VLARG 156          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.526e-42
Identity = 84/171 (49.12%), Postives = 120/171 (70.18%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIER 691
            M Q+  IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL++ G+ + VVA +S+ + +   FLERVK DFK+RYG    +                    +IA +L++EFGP +KEHM Y + H EE+ KL K+KAQ++EVK IM++NI++
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKAST-------------------AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDK 152          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 53/173 (30.64%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            ++Y+ V++GTVVL+E T+ S N STIA Q L+K+P  + S  +YS D + F+     G   L +A+E+ GR +PF FLE +   F + YG ++                      ++AY ++ EF   L + + Y  + P    +++++K ++ +V+G+M++NI++  ++ RG
Sbjct:    3 ILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAYAMNEEFSRVLSQQIDYYSNDP-NADRINRIKGEMNQVRGVMIENIDK--VLDRG 152          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 53/174 (30.46%), Postives = 100/174 (57.47%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            +I++ V++GTVVL+E ++ S N S+I+ Q L+KLP   S S  +YS D + F+     G   L +ADE+ GR++PF FL+ +   F + YG +I + +                    AY+++ EF   L + M++  + P    ++S++K ++++V+ +M++NI++  ++ RG
Sbjct:    3 IIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------AYSMNDEFSRVLSQQMEFYSNDP-NADRMSRIKGEMSQVRNVMIENIDK--VLDRG 153          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNI 685
            +IYS V++G+ VLAE TS +GNF TI  + L  +P + +K +Y  + + F++L+     +L +ADE  GR +PF FL+ VK+ FK  YG                       + +IAY ++ +F   L+  M +  S+   +  +S+  A+I EVK I++ +I
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYG--------------------DKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDI 144          
The following BLAST results are available for this feature:
BLAST of FC929974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA727_ARATH1.085e-7780.79Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA725_ARATH1.336e-5153.01Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA726_ARATH3.888e-5154.24Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH2.133e-4952.54Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH4.752e-4952.54Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH4.603e-4448.02Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH2.526e-4249.12Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA711_ARATH5.125e-1930.64Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH2.543e-1830.46Vesicle-associated membrane protein 713 OS=Arabido... [more]
VAM7B_DICDI4.338e-1832.52Vesicle-associated membrane protein 7B OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionC34002D10EF PostHarvC1 Citrus clementina cDNA clone C34002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929974 ID=FC929974; Name=FC929974; organism=Citrus clementina; type=EST; length=720bp
ACCACGACTTAACCCCAAAATAAAAAAAGCACACACAAGACGTTTAAACA
GTTAACCCCCGCGGAGTCTTCGACTTCAACTCTAAGCAAACAATCAACCG
TCTCCAGATTCTCTCTCTTTGTTCCTCGATTCGAAATTCATCCGGCGGCT
TTCTTTTCCGGAATTGAGAAATTGGAAAGAAATGAATCAGAAAGGGTTGA
TTTACAGCTTTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCG
TATTCCGGAAATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCC
TGCGAGTAGTAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACT
TCCTCCTCGACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTT
GGGAGAAGTGTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAA
ACAGCGGTATGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTG
ATGATGATGAGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTAT
AATCTTGACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTG
TATGAGCCACCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTCAAA
TAACTGAGGTCAAGGGGATTATGATGGACAATATTGAGAGGTTTTGGATC
GTGGGGAGAGGATGAGCTAC
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