FC929976

Overview
NameFC929976
Unique NameFC929976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15076 contig Ccv1_Contig15076:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A3_HUMAN (Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 63/210 (30.00%), Postives = 103/210 (49.05%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTI--------LGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTF 697
            GR  V  ++V+ Q GFC  Y +F+A+ L  M+  +  +  I        L  +     Y+    PF + L  I  L  L+  S  A+I  LG+M L+  E +M  +     L    ++  F    G A++ FEGVGM+LPL+++ ++ Q+F  +L   M+ + +LY   G LGY  FG +T+  IT N     +   V +   + +F T+
Sbjct:  134 GRYTVSFLLVITQLGFCSVYFMFMADNLQQMVEKAHVTSNICQPREILTLTPILDIRFYMLIILPFLILLVFIQNLKVLSVFSTLANITTLGSMALIF-EYIMEGIPYPSNLPLMANWKTFLLFFGTAIFTFEGVGMVLPLKNQMKHPQQFSFVLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNLPNCWLYQSVKLMYSIGIFFTY 342          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A1_RAT (Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 67/211 (31.75%), Postives = 107/211 (50.71%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN--NSTTSQ------TILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPA-LKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTF 697
            GR  VD  +V+ Q GFC  Y +F+A+    +I   N TT+        IL       LY+    PF + L+ I  L  L+  S+ A+I     + L+M+   ++     P+ L     +  +    G A++AFEG+G++LPLE++ ++ Q+F  IL   MA I++LY S G+LGY  FG + K  IT N     +   V +   + +F T+
Sbjct:  138 GRRIVDFFLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMDSRLYMLTFLPFLVLLSFIRNLRILSIFSLLANISMF--VSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPNCWLYQSVKLLYSIGIFFTY 346          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A4_XENLA (Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 65/213 (30.52%), Postives = 107/213 (50.23%), Query Frame = 2
Query:   86 SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN---NSTTSQTILGFLS-PKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG-----LVSTLVNVGLCVNLFLTF 697
            S GR  VD  +V+ Q GFC  Y +F+A  +  +      +   Q+ +G  S    +Y++   P  + L  I  L +L+ LS FA+ V +    L++ + V+ ++     L     +  +    G A++AFEG+G++LPLE+  R+K+ F + L   MA ++ LY S   LGYF FG++ K  IT N         LV  L + G+ V   + +
Sbjct:  176 SFGRNLVDWFLVVTQLGFCSVYFVFLAENIKQVFEVFLETKLQQSEIGIWSLDLRIYMFSFLPLIIPLVFIRDLKNLSLLSFFAN-VSMAISLLIVYQYVIRNLSDPRTLPLGTSWKTYPLFFGTAIFAFEGIGVVLPLENRMRDKKDFSKALNIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILYSFGIYVTYAIQY 387          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A1_MOUSE (Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 65/211 (30.81%), Postives = 108/211 (51.18%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI---NNSTTS--QTILGFLSP---KALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPA-LKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTF 697
            GR  VD  +++ Q GFC  Y +F+A+    +I   N +TT+    +    +P     LY+    PF + L+ I  L  L+  S+ A+I     + L+M+   ++     P+ L     +  +    G A++AFEG+G++LPLE++ ++ Q+F  IL   MA I++LY S G+LGY  FG   K  IT N     +   V +   + +F T+
Sbjct:  138 GRRIVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLYMLSFLPFLVLLSFIRNLRVLSIFSLLANISMF--VSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWLYQSVKLLYSIGIFFTY 346          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A1_HUMAN (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 64/213 (30.05%), Postives = 108/213 (50.70%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI-------NNSTTSQTILGFLSP---KALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPA-LKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTF 697
            GR  VD  +++ Q GFC  Y +F+A+    +I       NN   ++T++  L+P     LY+    PF + L  I  L  L+  S+ A+I  L  + LVM+   ++     P+ L     +  +    G A+++FEG+GM+LPLE++ ++ ++F  IL   M  +++LY S G LGY  FG   +  IT N     +   V +   + +F T+
Sbjct:  139 GRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVI--LTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITML--VSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTY 347          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: YAN9_SCHPO (Putative amino acid permease C3H1.09c OS=Schizosaccharomyces pombe GN=SPAC3H1.09c PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 64/219 (29.22%), Postives = 117/219 (53.42%), Query Frame = 2
Query:   53 SFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADI-VDLGAMGLVMVEDVMISMKQRPALKAFG--DFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFP 700
            SFGD+G T+ G   R A+ A IV++Q GF  +Y+ F+A+TL   +   +T+          A++I+  F   + L+ +  ++ L+  ++ AD+ + LG + L   + + ++ K    +  F   DFS+F   IGVA++ +EG+ +ILP++ +    +   ++L   MA ISLL+ S G L Y AFG + K ++  N      + ++     + + L+ P
Sbjct:  336 SFGDIGGTLYGPHMRFAILASIVVSQIGFSSAYISFVASTLQACVKVISTTHREYHL----AVFIFIQFLVFVPLSLVRKISKLSATALIADVFILLGILYLYFWDVITLATKGIADVAMFNKTDFSLF---IGVAIFTYEGICLILPIQEQMAKPKNLPKLLTGVMAAISLLFISIGLLSYAAFGSKVKTVVILNMPESTFTVIIQFLYAIAILLSTP 547          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A3_MOUSE (Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 60/210 (28.57%), Postives = 98/210 (46.67%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTL------THMINN--STTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTF 697
            GR  V  ++++ Q GFC  Y +F+A+ L       H  +N        ++  +     Y+    PF + L  I     L+  S  A I  L ++ L+   + +I       L    ++  F    G A++ FEGVGM+LPL+S+ ++ Q+F  +L   M+F+  LY   G LGY  FG +T+  IT N     +   V +   V +F T+
Sbjct:  142 GRYVVSFLLIVTQLGFCSVYFMFLADNLQQIMEEAHFTSNVCQPRQSLVMTSILDTRFYMLTILPFLILLVLIQNPQVLSIFSTLATITTLSSLALIF--EYLIQTPHHSNLPLVANWKTFLLFFGTAIFTFEGVGMVLPLKSQMKSPQQFPAVLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLPICWLYQSVKLMYSVGIFFTY 349          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A3_RAT (Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 57/210 (27.14%), Postives = 99/210 (47.14%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTI--------LGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTF 697
            GR  V  ++++ Q GFC  Y +F+A+ L  ++  +  +  +        +  +     Y+    PF + L  +     L+  S  A I  L ++ L+   + +I +     L     +  F    G A++ FEGVGM+LPL+S+ ++ Q+F  +L   M+F+  LY   G LGY  FG +T+  IT N     +   V +   V +F T+
Sbjct:  142 GRYVVSFLLIVTQLGFCSVYFMFMADNLQQIVEEAHFTSNVCQPRQSLVMTSILDTRFYMLTILPFLILLVLVQNPQVLSIFSTLATITTLSSLALIF--EYLIQIPHHSHLPLVASWKTFLLFFGTAIFTFEGVGMVLPLKSQMKSPQQFPAVLYLGMSFVIFLYICLGTLGYMKFGADTQASITLNLPNCWLYQSVKLMYSVGIFFTY 349          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A2_RAT (Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 62/192 (32.29%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN--NSTT-----SQTILGFLSP---KALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAM-GLVMVEDVMISMKQRPA-LKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTN 631
            GR AV   +++ Q GFC  Y++F+A+ L  ++   NSTT     ++T++  L+P     LY+    P  LGL  +  + +L  L+IF+ + ++  +  LV++   +I     P+ L     +  +    G A+++FE +G++LPLE++ ++ +RF  IL   M+ I+ LY + GALGY  FG++ K  IT N
Sbjct:  144 GRHAVSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVV--LTPTIDSRLYMLAFLPV-LGL--LVFIRNLRVLTIFSLLANVSMLVSLVIIGQYIIQGIPDPSQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKDARRFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLN 330          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A2_HUMAN (Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 55/188 (29.26%), Postives = 96/188 (51.06%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN--NSTTSQ------TILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTN 631
            GR  V   +++ Q GFC  Y++F+A+ L  ++   NSTT+        IL       LY+    PF + L  I  L  L   S+ A+I  L ++ +++++ +   +     L     +  +    G A+++FE +G++LPLE++ +N + F  IL   M+ ++ LY    ALGY  FG++ K  I+ N
Sbjct:  146 GRHIVSFFLIITQLGFCCVYIVFLADNLKQVVEAVNSTTNNCYSNETVILTPTMDSRLYMLSFLPFLVLLVLIRNLRILTIFSMLANISMLVSL-VIIIQYITQEIPDPSRLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKNARHFPAILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLN 332          
The following BLAST results are available for this feature:
BLAST of FC929976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
S36A3_HUMAN2.663e-2030.00Proton-coupled amino acid transporter 3 OS=Homo sa... [more]
S36A1_RAT3.478e-2031.75Proton-coupled amino acid transporter 1 OS=Rattus ... [more]
S36A4_XENLA4.543e-2030.52Proton-coupled amino acid transporter 4 OS=Xenopus... [more]
S36A1_MOUSE1.726e-1930.81Proton-coupled amino acid transporter 1 OS=Mus mus... [more]
S36A1_HUMAN1.726e-1930.05Proton-coupled amino acid transporter 1 OS=Homo sa... [more]
YAN9_SCHPO2.945e-1929.22Putative amino acid permease C3H1.09c OS=Schizosac... [more]
S36A3_MOUSE1.909e-1828.57Proton-coupled amino acid transporter 3 OS=Mus mus... [more]
S36A3_RAT2.493e-1827.14Proton-coupled amino acid transporter 3 OS=Rattus ... [more]
S36A2_RAT1.616e-1732.29Proton-coupled amino acid transporter 2 OS=Rattus ... [more]
S36A2_HUMAN4.701e-1729.26Proton-coupled amino acid transporter 2 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002D12EF PostHarvC1 Citrus clementina cDNA clone C34002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929976 ID=FC929976; Name=FC929976; organism=Citrus clementina; type=EST; length=707bp
GGTTCACACTCGTCGCAAGCTTGAAACCATTCATGGCTTCTCAAAAATCA
ATTCTTTTGGCGATCTTGGCTATACCGTTTGTGGTTCAGTTGGTCGTGTA
GCTGTCGATGCTATGATAGTCCTTGCGCAAGCTGGTTTCTGTGTTAGTTA
TCTAATCTTCATTGCCAATACTTTAACTCATATGATTAATAATAGCACTA
CTTCACAAACTATTCTTGGCTTTTTGTCACCTAAGGCTCTGTATATTTGG
GGGTGTTTCCCTTTCCAACTAGGGTTAAATTCAATTCCAACTTTGACTCA
TTTGGCCCCTTTGAGTATTTTTGCTGATATTGTTGATCTTGGAGCTATGG
GACTAGTGATGGTTGAAGATGTCATGATTTCCATGAAACAAAGGCCTGCT
TTAAAGGCTTTTGGTGACTTTTCTGTCTTCAGTTATGGGATTGGTGTCGC
TGTTTATGCCTTTGAAGGGGTTGGCATGATATTGCCGTTGGAATCTGAGA
CTAGAAACAAACAGAGATTTGGTCGAATATTGGGATGGTGTATGGCTTTC
ATTTCTCTATTGTATGGTTCATTTGGTGCATTGGGTTACTTTGCTTTTGG
TGAAGAAACCAAAGATATAATCACTACCAATTTTGGGGCTGGATTGGTGA
GCACTTTGGTGAATGTGGGTCTGTGTGTGAATCTGTTTTTGACTTTTCCA
TGATGAT
back to top