FC929980

Overview
NameFC929980
Unique NameFC929980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10454 contig Ccv1_Contig10454:9..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929980 vs. ExPASy Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.590e-15
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:  319 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA--VALVSTNGPWITFMKLRLDRVLSDSYEAGS--LEEALAS 612
            YY+ +A+ KF+L EEE F+E+L ER R+YGE++KE DFW VI+P FL+       + + P   VA+VSTN  +I ++KLRL+ VL+  +EA S  + + LAS
Sbjct:   31 YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAPEKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131
The following BLAST results are available for this feature:
BLAST of FC929980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC54L_SYNY32.590e-1547.06Ycf54-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionC34002E04EF PostHarvC1 Citrus clementina cDNA clone C34002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929980 ID=FC929980; Name=FC929980; organism=Citrus clementina; type=EST; length=711bp
GAGGCATTGAGAGAGGAAGTATATCTGTTCGCTATTTTAACTGCAGAAAA
AGTAGGAGGAGAATCTAAAATGTCGACATCAGCAAGCCTAAGCGTAACTG
CTGGTATGCCGATTTCTACACAACATGGCTCTGCTGGCAGAGGCAGAGCT
ATAGTTCTATCAGTTCCAAGCAATCATACATTGCCACAGGGACTGGGTCT
TGTTTCTGCTCATTCAAACTTGAAGGGACGCAGAGGAAGCTTCAAGACGG
CCGTGGCTTCTGTTGACTCCAACCAGATTAGTTCCTCCTCTGTTCCTCCT
GAAAAGGAAGCAAACAAGTATTATTTTGTTGTTGCGAATGCAAAGTTCAT
GCTGGACGAAGAAGAGCACTTCCAGGAGCTCTTGTTCGAGCGCCTACGGA
ACTATGGAGAGCGTAGTAAAGAGCAGGACTTTTGGTTAGTTATTGAGCCC
AAGTTCTTGGATAAGTTCCCTAACATTACTAAGAGATTGCGCAGACCTGC
TGTCGCTCTGGTTTCAACTAATGGTCCCTGGATTACGTTTATGAAACTGA
GGCTGGACCGGGTTTTATCAGATAGCTATGAAGCTGGCAGTCTAGAGGAA
GCTTTAGCCTCTAATCCTGCCACTCTCGAGTTTGAGAAGCAAGAGAAGTG
GGTGGCACCTTATCCGAAATATGAATTTGGATGGTGGGAGGCCTTTCTGC
CTACCGNATCA
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