FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929982_ssr33 microsatellite FC929982_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 6.920e-93
Identity = 160/200 (80.00%), Postives = 182/200 (91.00%), Query Frame = 2
Query:  110 WKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            WKL +HP+L +   +A+VVLDGWGE KPD+YNCIHVA+TPTMDSFKK+APERWRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+ EGF Y+K  F+ GTLHLIGLLSDGGV SRLDQLQLLLKGA+E GAKRIR+H+LTDGRDV+DG+SVGF ET+EKDL  LR KGVDAQ+ASGG RM
Sbjct:    5 WKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVAETPTMDSFKKTAPERWRLIKAHGTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKGTLHLIGLLSDGGVHSRLDQLQLLLKGAAEHGAKRIRVHVLTDGRDVIDGTSVGFAETLEKDLENLREKGVDAQVASGGGRM 204          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.434e-92
Identity = 163/201 (81.09%), Postives = 181/201 (90.05%), Query Frame = 2
Query:  107 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            +WKL +HP+L +   +A+VVLDGWGE   ++YNCIHVA+TPTMDS K+ APE+WRL+RAHG AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLAL SGKIY  EGFNYIK SFET TLHLIGLLSDGGV SRLDQLQLLLKG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DLA+LR KGVDAQIASGG RM
Sbjct:    7 SWKLADHPKLPKGKTLAMVVLDGWGEASANQYNCIHVAETPTMDSLKQGAPEKWRLIRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALESGKIYDGEGFNYIKESFETNTLHLIGLLSDGGVHSRLDQLQLLLKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAQLRAKGVDAQIASGGGRM 207          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.226e-91
Identity = 162/201 (80.60%), Postives = 178/201 (88.56%), Query Frame = 2
Query:  107 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            +W L +HP+L +   VAVVVLDGWGE  PD+YNCIHVA TP MDS K  APE+WRLV+AHG+AVGLP++DDMGNSEVGHNALGAGRIFAQGAKLVD ALASGKIY  +GFNYIK SFE+GTLHLIGLLSDGGV SRLDQLQLLLKG SERGAK+IR+HILTDGRDVLDGSS+GFVET+E DL ELR KGVDAQIASGG RM
Sbjct:    7 SWTLPDHPKLPKGKSVAVVVLDGWGEANPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDQALASGKIYDGDGFNYIKESFESGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGAKKIRVHILTDGRDVLDGSSIGFVETLENDLLELRAKGVDAQIASGGGRM 207          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.034e-88
Identity = 155/201 (77.11%), Postives = 175/201 (87.06%), Query Frame = 2
Query:  107 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            NWKL +HP+L +   + ++VLDGWGE  PD+YNCIH A TP MDS K   P+ WRL++AHG+AVGLP+EDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+DEGF YI  SFE GT+HLIGLLSDGGV SRLDQ+QLLLKG +ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DLA LR KGVDAQ+ASGG RM
Sbjct:    8 NWKLADHPKLPKGKTIGLIVLDGWGESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLAALRAKGVDAQVASGGGRM 208          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.764e-88
Identity = 155/202 (76.73%), Postives = 178/202 (88.12%), Query Frame = 2
Query:  104 DNWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            D WKLK+HP+L +   VAV+VLDGWGE KP+++N IHVA+TP M S K  APE+WRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIY+ EGF Y+K  FE GTLHLIGLLSDGGV SRLDQ+QLLLKGA++ GAKRIR+H LTDGRDVLDGSSVGF+ET+E  LA+LR KG+DAQ+ASGG RM
Sbjct:    6 DAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEFNAIHVAETPVMYSLKNGAPEKWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEGEGFKYVKECFEKGTLHLIGLLSDGGVHSRLDQVQLLLKGAAKHGAKRIRVHALTDGRDVLDGSSVGFMETLENSLAQLREKGIDAQVASGGGRM 207          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 316.62 bits (810), Expect = 8.193e-86
Identity = 151/200 (75.50%), Postives = 171/200 (85.50%), Query Frame = 2
Query:  110 WKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            WKL +HP+L +   +AV+VLDGWGE  PD+YNCIH A TP MDS K  AP+ W L++AHG+AVGLP+EDDMGNSEVGHNALGAGRIFAQGAKL D ALASGKI++ EGF Y+  SFET TLHL+GLLSDGGV SRLDQLQLL+KG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DL  LR  GVDAQIASGG RM
Sbjct:    7 WKLDDHPKLPKGKTIAVIVLDGWGESAPDQYNCIHNAPTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLCDQALASGKIFEGEGFKYVSESFETNTLHLVGLLSDGGVHSRLDQLQLLIKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLVALRENGVDAQIASGGGRM 206          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.456e-58
Identity = 115/136 (84.56%), Postives = 122/136 (89.71%), Query Frame = 2
Query:  302 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            LPTEDDMGNSEVGHNALGAGRIFAQGAKLVD AL +GK+Y+ EGF YIK SF T TLHLIGLLSDGGV SRLDQL LL+KGASERGAKRIR+HILTDGRDVLDGSSVGF ET+E  LA+LR KGVDAQIASGG RM
Sbjct:    1 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDSALETGKLYEGEGFKYIKESFPTNTLHLIGLLSDGGVHSRLDQLLLLVKGASERGAKRIRVHILTDGRDVLDGSSVGFAETLENYLAQLREKGVDAQIASGGGRM 136          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.040e-35
Identity = 85/194 (43.81%), Postives = 115/194 (59.28%), Query Frame = 2
Query:  140 RNNIVAVVVLDGWGEYK--PDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG V S +D  + L+  A      +IRLHIL DGRDV + S++ ++   E  L  LR  G D +IASGG RM
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYLNPFETWLDSLRKSGTDIRIASGGGRM 205          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.040e-35
Identity = 85/194 (43.81%), Postives = 115/194 (59.28%), Query Frame = 2
Query:  140 RNNIVAVVVLDGWGEYK--PDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGSRM 709
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG V S +D  + L+  A      +IRLHIL DGRDV + S++ ++   E  L  LR  G D +IASGG RM
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYLNPFETWLNSLRKSGTDIRIASGGGRM 205          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 676
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGV S +  L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++  GV
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLIANPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHIKHLCGLIEWAASKGLKNVSLHLFTDGRDTSAKSATKYINTIE---AKIKATGV 188          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
PMGI_RICCO6.920e-9380.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MESCR3.434e-9281.092,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE2.226e-9180.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH1.034e-8877.11Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMGI_TOBAC1.764e-8876.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG1_ARATH8.193e-8675.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU1.456e-5884.562,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN5.040e-3543.81Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC5.040e-3543.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT1.470e-2638.422,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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