FC929983

Overview
NameFC929983
Unique NameFC929983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929983_ssr22 microsatellite FC929983_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
FC929983_ssr628 microsatellite FC929983_ssr628:628..639. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15502 contig Ccv1_Contig15502:4..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 105/199 (52.76%), Postives = 137/199 (68.84%), Query Frame = 3
Query:  108 MNSFHDQLMKPP--NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            M S  +  M P   +DEE  +  M+LA +S+LPM +KA IEL +LEI+AKA P   LS ++IASQLPT N +A  +LDRMLRLLASYS LTY+L T  DG V R+YGL  VC++L  NE+GVS+AP+ L+ QDKV ++  YHLKD +LEG +PF KA+     FEY   D R   +FN+ M +H+ + MKKILE  +GF
Sbjct:    1 MGSTGETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGF 198          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.228e-47
Identity = 104/199 (52.26%), Postives = 136/199 (68.34%), Query Frame = 3
Query:  108 MNSFHDQLMKPP--NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            M S  +  M P   +DEE  +  M+LA +S+LPM +KA IEL +LEI+AKA P   LS +++ASQLPT N EA  +LDRMLRLLASYS LTY+L T  DG V R+YGL  VC++L  NEDGVS+A + L+ QDKV V+  YHLKD +L+G +PF KA+     F+Y   D R   +FN+ M +H+ + MKKILE  +GF
Sbjct:    1 MGSTGETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESWYHLKDAVLDGGIPFNKAY-GMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGF 198          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45
Identity = 102/199 (51.26%), Postives = 135/199 (67.84%), Query Frame = 3
Query:  108 MNSFHDQLMKPP--NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            M S  +  M P   +DEE  +  M+LA +S+LPM +K  IEL +LEI+AKA P   LS+SEIAS LPT N +A  +LDR+LRLLASYS LT +L    DG V R+YGLA VC++L  NEDGVS++P+ L+ QDKV ++  Y+LKD +LEG +PF KA+     FEY   D R   +FN+ M +H+ + MKKILE  +GF
Sbjct:    1 MGSTGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGF 198          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 101/199 (50.75%), Postives = 135/199 (67.84%), Query Frame = 3
Query:  108 MNSFHDQLMKPP--NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            M S  +  M P   +DEE  +  M+LA +S+LPM +K  IEL +LEI+AKA P   LS+SEIAS LPT N +A  +LDR+LRLLASYS LT +L    DG V R+YGLA VC++L  NEDGVS++P+ L+ QDKV ++  Y+LKD +L+G +PF KA+     FEY   D R   +FN+ M +H+ + MKKILE  +GF
Sbjct:    1 MGSTGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGF 198          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: IEMT_CLABR ((Iso)eugenol O-methyltransferase OS=Clarkia breweri GN=IEMT1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 97/186 (52.15%), Postives = 130/186 (69.89%), Query Frame = 3
Query:  144 NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ--LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +DEE  +  M+LA +++LPM +KA IEL VLEI+AK+ P    +S +EIA+QLPT N EA  +LDR+LRLLASYS +TY L     G V R+YGLA VC++L  NEDGVSLAP  L A DKV ++P ++LKD +LEG +PF KA+   N F+Y   D R   +FN+ M +++ + MKKILE+  GF
Sbjct:   17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLTATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNEFDYHGTDHRFNKVFNKGMSSNSTITMKKILEMYNGF 201          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 95/184 (51.63%), Postives = 129/184 (70.11%), Query Frame = 3
Query:  147 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASP-SQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +EE  +  M LA +S+LPM +K+ IEL +LE++AKA P + +S SE+A+QLPT+N EA  +LDR+LRLLA+YS L   L    DG V R+YGLA VC++L  N DGVS+AP+ L+ QDKV ++  YHLKD +L+G +PF KA+     FEY   D R   +FNQ M NH+ + MKKILE+ +GF
Sbjct:    3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGF 185          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 95/184 (51.63%), Postives = 128/184 (69.57%), Query Frame = 3
Query:  147 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASP-SQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +EE  +  M LA +S+LPM +K+ IEL +LE++ K+ P + +S SE+A+QLPT N +A  +LDR+LRLLASYS L   L    DG + R+Y LA VC++L  NEDGVS+A + L+ QDKV ++  YHLKD +LEG +PF KA+     FEY  KD R   +FNQ M NH+ ++MKKILEI QGF
Sbjct:   16 EEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAALLLMNQDKVLMESWYHLKDAVLEGGIPFNKAY-GMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGF 198          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 96/185 (51.89%), Postives = 128/185 (69.19%), Query Frame = 3
Query:  144 NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +DEE  +  M+LA +S+LPM +KA IEL +LEI+AKA P   LS  E+A+QLPT N EA  +LDR+ RLLASYS LT  L    DG V R+YGLA VC++L+ NEDGVS+A + L+ QDK+ ++  Y+LKD +LEG +PF KA+     FEY   D R   +FN+ M +H+ + MKKILE  +GF
Sbjct:   16 SDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNEDGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAY-GMTAFEYHGTDPRFNKIFNRGMSDHSTITMKKILETYKGF 199          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 95/185 (51.35%), Postives = 131/185 (70.81%), Query Frame = 3
Query:  144 NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASP-SQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +DEE  +  M+LA +S+LPM +K+ +EL +LEI+AKA P +Q+S  EIASQLPT N +A  +LDRMLRLLA Y  LT ++ T +DG V R+YGLA+V +YL+ NEDGVS++ + L+ QDKV ++  YHLKD +L+G +PF KA+     FEY   D R   +FN+ M +H+ + MKKILE   GF
Sbjct:   15 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGF 198          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.341e-44
Identity = 96/188 (51.06%), Postives = 131/188 (69.68%), Query Frame = 3
Query:  144 NDEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASP----SQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +DEE  +  M+LA +S+LPM +KA IEL VLEI+AK+ P    + +S +EIA+QLPT N +A  +LDR+LRLLASYS +T +L    DG V R+YGLA VC++L  NEDGVSLAP+ L+ QDKV ++  Y+LKD +L+G +PF KA+     FEY   D R   +FN+ M +H+ + MKKI E+  GF
Sbjct:   17 SDEEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGAYISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGF 203          
The following BLAST results are available for this feature:
BLAST of FC929983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
COMT1_PRUDU8.496e-4852.76Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_ROSCH3.228e-4752.26Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT1_POPKI1.039e-4551.26Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_POPTM2.314e-4550.75Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
IEMT_CLABR5.154e-4552.15(Iso)eugenol O-methyltransferase OS=Clarkia brewer... [more]
COMT1_COFCA5.154e-4551.63Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
COMT1_CATRO6.732e-4551.63Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
COMT1_EUCGU1.500e-4451.89Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_MEDSA1.959e-4451.35Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_CLABR3.341e-4451.06Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]

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Properties
Property NameValue
Genbank descriptionC34002E07EF PostHarvC1 Citrus clementina cDNA clone C34002E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929983 ID=FC929983; Name=FC929983; organism=Citrus clementina; type=EST; length=696bp
AAACTAATATATCTATACGTGTATATATATAGTTATATACTGAGCGCTCA
TCAACATCATCCATTGCCATTTTGTTAATTTCAGCATATCCTACTCCGAG
AATTAAGATGAATTCATTCCATGACCAACTCATGAAACCACCAAACGATG
AGGAAGATTTCATGCTGATCATGGAGCTTGCCCACAGCTCATTACTTCCG
ATGACCATGAAAGCTATCATCGAGCTTGGTGTGTTAGAGATTTTAGCTAA
AGCTAGTCCATCTCAGCTTTCTTCTTCTGAGATTGCATCTCAGCTGCCCA
CAAATAACCAAGAAGCCTCAACAGTACTTGATCGAATGTTACGACTCCTT
GCTAGTTACTCTTTCCTAACATATAATCTTGTCACAAATAAAGATGGAAA
TGTTTTCAGAGTATATGGTTTAGCGTCCGTTTGCAGATATTTGCTTCCAA
ATGAAGACGGAGTTTCTCTTGCTCCCATTTTCCTCTTAGCTCAGGACAAA
GTTTCTGTAGATCCTGGGTACCACTTGAAAGATTGTTTATTGGAAGGGAC
CCTGCCTTTTATGAAGGCACATAATGCAAAAAATCCATTTGAGTATGCTA
TGAAAGATGCTAGAAGACGGAACCTCTTCAATCAATCAATGCGCAATCAT
ACGGCTTTAGTTATGAAGAAAATTCTTGAAATCTANCAAGGATTTG
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