FC929984

Overview
NameFC929984
Unique NameFC929984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15078 contig Ccv1_Contig15078:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_NEMVE (Proteasome assembly chaperone 2 OS=Nematostella vectensis GN=psmg2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   66 EEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAET--VGYLDDQFVLPCVGNDAYRP--SPRGGLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS-SGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            E    L  S   LILPA+SIGNVGQLA DL +SS  +    +GYL D  +LP VGNDA+      +G L L  + Y+S+   L ++QQR+P+ KG    Y + L  +      K VV+LS++      R+D    G  + Y++++         ++L W +L++
Sbjct:    7 ENVNDLDFSGFTLILPAVSIGNVGQLATDLTISSLSSSRHLIGYLHDASILPVVGNDAFARLGHEKGELNLSAEVYQSTEKRLVIVQQRAPISKGHYANYCQKLLAWIKRCSFKQVVLLSSI--SATDRVDAQLQGSPLRYMTTSVSQQLSSSFDKLSWVQLEK 168          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_DICDI (Proteasome assembly chaperone 2 OS=Dictyostelium discoideum GN=psmG2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 44/135 (32.59%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  102 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYR--PSPRGGLALPLQAYESS-SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS-SGPQIYYLSSTSVD 494
            LI P+L++GN+GQL +D+L+ S   + +G++ D+ + P +GND +    +  G ++  ++ Y+SS    +TL+QQRSP+V G +  +++NL  +  A   K ++ LS+ +  +  R+D   +G Q+ ++ S +VD
Sbjct:   22 LIWPSLTLGNIGQLTIDVLICSFEFKRIGFIVDENITPIIGNDCFTTLDNNNGIMSTSIEVYQSSLFPSITLVQQRSPIVDGRIPNFSENLFKWINAEEIKEILFLSSSNANK--RVDSQLTGSQVRFIKSDNVD 154          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_DANRE (Proteasome assembly chaperone 2 OS=Danio rerio GN=psmg2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 46/149 (30.87%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  102 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGG--LALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            LILPA+S+GNVGQLAVDLL+S+     VGY     ++P  GN+ Y  S      L+   + Y      L ++Q R+P+++  +  + K +  +  +SG    V+LS+    +     +   P  Y LS +         E+LGW+ +++
Sbjct:   17 LILPAVSVGNVGQLAVDLLISTLNMPRVGYFHTDCLIPMAGNNPYASSTEDAAQLSTSAEVYSHRDLKLAVLQIRAPIIQTKVKSFRKLMISWMKSSGFLRTVLLSSAHAYQRDDQQLHGTPLRYMLSPSLEKEERQRFEELGWREMEK 165          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_BOVIN (Proteasome assembly chaperone 2 OS=Bos taurus GN=PSMG2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  102 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGGLALPLQA--YESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +      L + A  Y   S  L  +Q RS  +K     + + L  +   SG   VVVLS+        + + S P  Y L+ +      +  + L W+ +++
Sbjct:   17 LLMPAVSVGNVGQLAIDLIISTLNMHKIGYFYTDCLVPMVGNNPYATAEENSAELSINAEVYALPSKKLVALQLRSIFIKYKSKSFCEKLLSWVKCSGCAKVVVLSSSHSYHRNDLQLRSTPFRYLLTPSMQKSVQNKIQSLNWEEMEK 165          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_HUMAN (Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  102 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGGLALPLQA--YESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +      L + A  Y   S  L  +Q RS  +K     + + L  +  +SG   V+VLS+    +   + + S P  Y L+ +      +  + L W+ +++
Sbjct:   17 LLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEK 165          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_XENLA (Proteasome assembly chaperone 2 OS=Xenopus laevis GN=psmg2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 44/153 (28.76%), Postives = 71/153 (46.41%), Query Frame = 3
Query:   90 SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGG--LALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            S S L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VGN+ Y  +      L    + Y   S  L ++Q RS V+K     + + L  +        V+ LS+          +   P  Y ++        D   +L WK +++
Sbjct:   13 SVSTLLLPAISVGNVGQLAIDLIISTLNIPKVGYFYTDCLVPMVGNNPYETNEENAKELCTNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVIFLSSCHAYHRDDKQLFGTPFRYLVTPALQKSVADVLSELEWKEMEK 165          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_MOUSE (Proteasome assembly chaperone 2 OS=Mus musculus GN=Psmg2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 41/149 (27.52%), Postives = 73/149 (48.99%), Query Frame = 3
Query:  102 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGG--LALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y         L++  + Y   S  L ++Q RS  +K     + + L  +  +SG   ++VLS+          + S P  Y L+        +  + L W  +++
Sbjct:   17 LLMPAVSVGNVGQLAIDLIISTLNMCKIGYFYTDCLVPMVGNNPYATEEENSNELSINTEVYSLPSKKLVVLQLRSIFIKYKSKSFCEKLLAWVESSGCARIIVLSSSHSYHRNDAQLRSTPFRYLLTPCLQKSVQNKIKSLNWLEMEK 165          
BLAST of FC929984 vs. ExPASy Swiss-Prot
Match: PSMG2_XENTR (Proteasome assembly chaperone 2 OS=Xenopus tropicalis GN=psmg2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 41/149 (27.52%), Postives = 70/149 (46.98%), Query Frame = 3
Query:  102 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGG--LALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 542
            L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VG++ Y         L    + Y   S  L ++Q RS V+K     + + L  +        V++LS+          +   P  Y ++        D  ++L WK +++
Sbjct:   17 LLLPAISVGNVGQLAIDLIISTLKIPKVGYFYTDCLVPMVGSNPYETDEENAKELCTNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVILLSSCHAYHRDDTQLFGTPFRYLVTPALQKSVADVLKELEWKEMEK 165          
The following BLAST results are available for this feature:
BLAST of FC929984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSMG2_NEMVE2.543e-1835.37Proteasome assembly chaperone 2 OS=Nematostella ve... [more]
PSMG2_DICDI4.489e-1532.59Proteasome assembly chaperone 2 OS=Dictyostelium d... [more]
PSMG2_DANRE2.910e-1430.87Proteasome assembly chaperone 2 OS=Danio rerio GN=... [more]
PSMG2_BOVIN8.467e-1429.53Proteasome assembly chaperone 2 OS=Bos taurus GN=P... [more]
PSMG2_HUMAN2.463e-1328.86Proteasome assembly chaperone 2 OS=Homo sapiens GN... [more]
PSMG2_XENLA3.557e-1228.76Proteasome assembly chaperone 2 OS=Xenopus laevis ... [more]
PSMG2_MOUSE4.646e-1227.52Proteasome assembly chaperone 2 OS=Mus musculus GN... [more]
PSMG2_XENTR5.136e-1127.52Proteasome assembly chaperone 2 OS=Xenopus tropica... [more]
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Properties
Property NameValue
Genbank descriptionC34002E08EF PostHarvC1 Citrus clementina cDNA clone C34002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929984 ID=FC929984; Name=FC929984; organism=Citrus clementina; type=EST; length=720bp
GAGATTCTCAAGCGGTCAAGCTCCTGGAGCTTTTACCCTCTCTCTTTAAA
ATGGAATTCGTTCTCGAAGAAGGCAAACACCTCAGCGAGAGCTGCTCAAA
CCTAATACTGCCTGCGTTATCGATCGGAAATGTGGGCCAGCTGGCGGTGG
ACCTACTCGTGTCGTCGACCGGAGCTGAAACAGTTGGATACTTGGACGAT
CAATTCGTGCTTCCTTGCGTCGGTAACGATGCTTACCGGCCGAGTCCACG
TGGCGGCCTTGCTCTTCCTCTTCAAGCTTATGAGTCATCTTCTAGTGGGC
TGACTCTTATCCAGCAAAGATCCCCAGTTGTTAAGGGGATGATGGTTGAA
TATGCTAAGAACTTGGCGGACTTTGCTGCTGCTAGCGGAAACAAGCATGT
GGTTGTGCTGTCTGCCTTAGACTTTGGGAGGTTGCAAAGAATTGATATGT
CAAGTGGGCCACAGATATATTACCTATCTAGCACCAGTGTCGATGGGACA
GATGATTACTGTGAGCAACTTGGATGGAAAAGACTTCAGGAATACAACCC
AGCTCAGAGGGGCTGGAAATATCTTAGCTCTTTAGCTGAAGGAGATGTTG
GGGACGAGAATAATTTTACTTTTGAGGATGATCTGGAAGAAGAAAGATTA
CTACCCAGTTTGCCTTTTGCTGCCCTATTTTCATGCTTTAAGGCCAGAAG
CTTGAAGGNTACATGCTTAT
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