FC929985

Overview
NameFC929985
Unique NameFC929985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929985_ssr338 microsatellite FC929985_ssr338:338..352. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15079 contig Ccv1_Contig15079:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929985 vs. ExPASy Swiss-Prot
Match: EDS5_ARATH (Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.791e-48
Identity = 91/115 (79.13%), Postives = 102/115 (88.70%), Query Frame = 2 
Query:  371 RGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRNLG 715
            RG L KQSIW QMKEIV FTGPA G+W+CGPLMSLIDT VIGQGSS+ELAALGPGTV+CD+++YVFMFLS+ATSNMVATSLA+QDK E QHQISVLLF+GL CG +MLL TR  G
Sbjct:   87 RGDLVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMSYVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFG 201
The following BLAST results are available for this feature:
BLAST of FC929985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EDS5_ARATH1.791e-4879.13Enhanced disease susceptibility 5 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34002E09EF PostHarvC1 Citrus clementina cDNA clone C34002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929985 ID=FC929985; Name=FC929985; organism=Citrus clementina; type=EST; length=716bp
GCGTGCATGTAAGACAGGAATCCTTCCCTCTTTCAAGTTTTGGTTTTGTA
CTAAAAAAAGTGAAAAAAAAAAACACTTAAAAATTCAAGAAAAAATGCAA
ATCAAAACCCTAATTCACCCATTGCAGGGATGCTCTCCATCTTTGATTAT
CTTGAACAAGACTCCAGCTCTCGCTCGCTTTCAGAGCTCATTTTCACCAC
CAAGTTTACGTTTTTTTACAACAAATATCCTTCACAGAGGAGTTAAAACT
AGCTGCATTAGTCCTGGGAAAGAACTGATTTTTGATGAAAATTGTGACAA
TTCAATTTCTTTATCTAAGAATGAAGAAGAAAAGGAAGAGGAGGAGGAGG
AGGTAGAAATGGAGGTGAAGAGGGGAGGATTGGAGAAGCAGAGTATATGG
AGTCAAATGAAGGAGATTGTGATGTTTACAGGACCCGCCACAGGGCTTTG
GCTCTGTGGGCCATTGATGAGTCTCATTGATACTGCTGTTATTGGTCAAG
GAAGCTCCGTCGAGCTTGCTGCTCTAGGGCCAGGAACAGTTATGTGCGAT
TATTTGACTTACGTGTTCATGTTCCTTTCAATTGCAACTTCGAACATGGT
TGCGACTTCCCTTGCCAGGCAGGATAAAAATGAAGTGCAGCATCAAATAT
CAGTCTTGCTCTTTGTTGGGTTGGCTTGTGGCTTCTTGATGCTTTTGTTT
ACAAGAAATCTTGGAT
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