FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929986_ssr424 microsatellite FC929986_ssr424:424..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.024e-31
Identity = 86/205 (41.95%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   51 MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPXXXXXXXXXXXXXDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDS 665
            MA+  EA  ++ ISQ+LL D + +   DH             PSLF N               R   N   KP+STL QRKP  + N+++ +T                  V+ K +                 EE+HYRGVRRRPWG+YAAEIRDPN+KG R+WLGT+DTAVEA +AYD AAF+LRG KAILNFPL+V  T ++
Sbjct:    1 MATKQEALAIDFISQHLLTD-FVSMETDH-------------PSLFTNQLHNFHSETGP----RTITNQSPKPNSTLNQRKPP-LPNLSVSRT------------------VSTKTEKEE--------------EERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSET 154          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29
Identity = 66/129 (51.16%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  264 KPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            +P    + RKP     +++P  T +   +  N   +   PV+ +                   E+KHYRGVR+RPWG++AAEIRDPN++GSRVWLGTFDTA+EAA+AYD AAFRLRGSKAILNFPLEVG
Sbjct:  110 EPELKSQIRKPPL--KISLPAKTEWIQFAAENTKPEVTKPVSEE-------------------EKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVG 217          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29
Identity = 90/229 (39.30%), Postives = 116/229 (50.66%), Query Frame = 3
Query:   51 MASLNEAST-LELISQYLLADQYF---------------------TSSIDHTHSFK---NISNLPQSPSL-----FNNPXXXXXXXXXXXXXDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            MAS  E ST L+LI Q+LL D  F                     + S+D + SF+   N +   QS +L     FNN              +     S +   ++ K+RKP+   N+ IP            V  +    V +                    E+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFDTA+EAAKAYD AA++LRGSKAI+NFPLEV
Sbjct:    1 MASPQENSTTLDLIRQHLLDDNVFLEHYCSETETTTLIYSQSSSSSESLDQSFSFEPTLNYATTAQSSNLEVSTFFNNSKTEFDSFEFGTIPNVSAARSSSLKQTSFKERKPSL--NIAIP------------VKQEVVQKVELA-----------------PTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEV 198          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.396e-28
Identity = 56/65 (86.15%), Postives = 64/65 (98.46%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            E+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFDTA+EAAKAYD AAF+LRGSKAI+NFPLEV
Sbjct:  141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEV 205          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            +++HYRGVRRRPWG+YAAEIRDPN+KG RVWLGTFDTA+EAA+ YD AAF+LRGSKAILNFPLE G
Sbjct:   68 DQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAG 133          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 79/216 (36.57%), Postives = 101/216 (46.76%), Query Frame = 3
Query:   51 MASLNEASTLELISQYLLAD--------------QYFTSSIDHTHSFKNISNLPQSPSLFNNPXXXXXXXXXXXXXDRDNIN---SRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            MA+ NE S L LI +YLL +                FTS       F      P+   L                    N +     N P  T++  +   +K +  P  T +   +  N   +   PV                      E++HYRGVR RPWG++AAEIRDP R+G+RVWLGTF+TA+EAA+AYD  AFRLRGSKAILNFPLEV
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKPPLK-IAPPNRTKWIQFATGNPKPELPVPVVAAE------------------EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEV 197          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            E +HYRGVRRRPWG++AAEIRDP +KGSR+WLGTF++ ++AA+AYD AAF+LRG KA+LNFPL+ G
Sbjct:  103 ETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAG 168          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 47/67 (70.15%), Postives = 61/67 (91.04%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            ++ +HYRGVRRRPWG++AAEIRDP +KGSR+WLGTF++ V+AA+AYD AAF+LRG KA+LNFPL+ G
Sbjct:  105 VDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAG 171          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  264 KPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            +PSS+      +   +V I    SF  +    V  +  +PV+                     + KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFPL V
Sbjct:   96 EPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAA---------------VTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 208          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            ++ KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+TA +AA AYD AAFR+RGS+A+LNFPL V
Sbjct:  112 VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRV 177          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
EF104_ARATH3.024e-3141.95Ethylene-responsive transcription factor ERF104 OS... [more]
EF102_ARATH2.167e-2951.16Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF5_NICSY2.830e-2939.30Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_TOBAC2.396e-2886.15Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF105_ARATH1.553e-2781.82Ethylene-responsive transcription factor ERF105 OS... [more]
EF103_ARATH2.242e-2636.57Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF107_ARATH3.580e-2471.21Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH3.580e-2470.15Ethylene-responsive transcription factor ERF106 OS... [more]
EF100_ARATH5.169e-2344.53Ethylene-responsive transcription factor 1A OS=Ara... [more]
EF101_ARATH6.751e-2371.21Ethylene-responsive transcription factor 2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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