FC929990

Overview
NameFC929990
Unique NameFC929990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929990_ssr421 microsatellite FC929990_ssr421:421..432. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11449 contig Ccv1_Contig11449:746..1469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929990 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 74/166 (44.58%), Postives = 87/166 (52.41%), Query Frame = 2
Query:    2 SGYGRKP--EYESGYGSKPEFESGYGRKPE--YESGYGSKHDDGSGYGS---KPHESGYGRKPD--YESGYG--SKPEYE--SGYGRKPEYESG-----YGSKPEYESGYGRKPXXXXXXXXXXXXXXXKFERKSSHGRSDD--EEGYKKPSSYGYERRGDDDEHS 439
            SGYGRKP  EY SGYG + E E  YGR+PE  Y SGYG + +  S YGS      E  YGR+P+    SGYG  S+ EYE    YGR  E E G     YG   E E GY RKP                  RK S+GRS++  EEGY+KPS   Y R  + +E S
Sbjct:  114 SGYGRKPESEYGSGYGGQTEVE--YGRRPEQSYGSGYGGRTETESEYGSGGGGRTEVEYGRRPESGLGSGYGGRSESEYERKPSYGRSEEQEEGYRKPSYGRSEEQEEGY-RKPSYGRSEEQEEGY------RKPSYGRSEEEQEEGYRKPS---YGRSEEQEEGS 267          

HSP 2 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 62/144 (43.06%), Postives = 77/144 (53.47%), Query Frame = 2
Query:   11 GRKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGSGYGSKPHESGYGRKPD--YESGYGSKPEYESGYGRKPEYESGYGSKPEYESGYGRKPXXXXXXXXXXXXXXXKFERKSSHGRSDD-EEGYKKPSSYGYERRGDDDE 433
            G +P    GYGS    ESGYGRKPE E         GSGYG +  E  YGR+P+  Y SGYG + E ES YG      SG G + E E  YGR+P               ++ERK S+GRS++ EEGY+KPS   Y R  + +E
Sbjct:  103 GERPN--PGYGS----ESGYGRKPESEY--------GSGYGGQT-EVEYGRRPEQSYGSGYGGRTETESEYG------SGGGGRTEVE--YGRRP-ESGLGSGYGGRSESEYERKPSYGRSEEQEEGYRKPS---YGRSEEQEE 219          
BLAST of FC929990 vs. ExPASy Swiss-Prot
Match: IF2_CLOPH (Translation initiation factor IF-2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=infB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 32/100 (32.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:    8 YG-RKPEYESGYGSKPEFESGYG-RKPEYESGYGSKHDDGSGYGSKPH--ESGYG-RKPDYESGYGSKPEYESGYG-RKPEYESGYGSKPEYESGYGRKP 289
            YG R+P+ +  YG +P+ +  YG R+P+ +  YG +      YG +    +  YG R+P  +  YG +P+ +  +G R+P+ + GYG +P+ +  YG +P
Sbjct:  330 YGDRRPQGQGSYGDRPQGQGSYGDRRPQGQGSYGDRPQGQGNYGDRRPGGQGSYGDRRPQGQGSYGDRPQGQGNFGDRRPQGQGGYGGRPQGQGSYGGRP 429          

HSP 2 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 2
Query:    8 YG-RKPEYESGYGSKPEFESGYG-RKPEYESGYGSKHDDGSG-YGSKPHESG-YG-RKPDYESGYGSKPEYESGYGRKPEYESGYGSKPEYESGYG 280
            YG R+P+ +  YG +P+ +  YG R+P  +  YG +   G G YG +P   G +G R+P  + GYG +P+ +  YG +P+ + GY  + + +  +G
Sbjct:  351 YGDRRPQGQGSYGDRPQGQGNYGDRRPGGQGSYGDRRPQGQGSYGDRPQGQGNFGDRRPQGQGGYGGRPQGQGSYGGRPQGQGGYAGRSQGQGSFG 446          
BLAST of FC929990 vs. ExPASy Swiss-Prot
Match: FP1_MYTGA (Adhesive plaque matrix protein OS=Mytilus galloprovincialis GN=FP1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 36/95 (37.89%), Postives = 44/95 (46.32%), Query Frame = 2
Query:    8 YGRKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGSGYGSKP-HESGYGRKPDYESGYGSKPEYESGYGRKPEYESGYGSKPEYESGYGRKP 289
            Y  KP Y + Y +KP +   Y  KP Y   Y +K      Y +KP +   Y  KP Y   Y +KP Y   Y  KP Y   Y +KP Y S Y  KP
Sbjct:  409 YKAKPRYPTTYKAKPSYPPTYKAKPSYPPTYKAKLSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKTKPSYPRTYKAKPSYSSTYKAKP 503          

HSP 2 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 36/95 (37.89%), Postives = 43/95 (45.26%), Query Frame = 2
Query:    8 YGRKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGSGYGSKP-HESGYGRKPDYESGYGSKPEYESGYGRKPEYESGYGSKPEYESGYGRKP 289
            Y  KP Y   Y +KP +   Y  KP Y   Y +K    S Y +KP +   Y  KP Y   Y +KP Y   Y  KP Y   Y +KP Y   Y  KP
Sbjct:  459 YKAKPSYPPTYKAKPSYPPTYKTKPSYPRTYKAKPSYSSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKP 553          
The following BLAST results are available for this feature:
BLAST of FC929990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5957_ARATH9.819e-1844.58Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
IF2_CLOPH8.902e-1132.00Translation initiation factor IF-2 OS=Clostridium ... [more]
FP1_MYTGA8.902e-1137.89Adhesive plaque matrix protein OS=Mytilus gallopro... [more]
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Properties
Property NameValue
Genbank descriptionC34002F02EF PostHarvC1 Citrus clementina cDNA clone C34002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929990 ID=FC929990; Name=FC929990; organism=Citrus clementina; type=EST; length=725bp
ATCCGGATATGGTAGGAAACCCGAGTACGAGTCTGGGTATGGCAGCAAGC
CGGAATTTGAATCCGGCTATGGTAGGAAACCCGAGTATGAGTCCGGCTAC
GGGAGTAAGCATGATGATGGGTCCGGCTATGGGAGTAAGCCCCATGAATC
TGGCTATGGGCGTAAACCCGATTATGAGTCCGGATATGGCAGCAAACCGG
AGTATGAATCTGGGTATGGGCGTAAGCCAGAGTATGAATCCGGGTATGGT
AGCAAGCCGGAGTACGAGTCGGGGTATGGGAGGAAACCTGAATCTGAATA
CGAAGGCGGGTACGGCGGTGGTTCGGAGTATGGAAAATTTGAGAGGAAGT
CGAGTCATGGGAGGTCTGATGACGAAGAAGGGTATAAGAAGCCCAGTAGT
TATGGTTATGAGAGACGTGGTGATGATGATGAACATAGCGGCGGGTCTCA
TGAGTATGGCTATGGACGCAAGAAGAAGGATGATGACAGTGATGATGACG
ATGAGAAGAAGCATAGCCGCCATAAGCACCAGCACCACCACAGGCACTAC
AATGACGAGTGATCGAGAAGCTCGCTATCTTTTAAATGGAATTCGTGCCG
TAGTTTGCTAAATAAAGGATGGGGGGTTGAGGCATGTCTTCCTTTGGGTG
ATTCTAGACCCCCCAGACATTTGGCATGTATTGGCTATTGTAAACTATGC
GTCATTCAGTGTTTGTTGCTGCTTA
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