FC929992

Overview
NameFC929992
Unique NameFC929992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT21_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.203e-73
Identity = 133/183 (72.68%), Postives = 150/183 (81.97%), Query Frame = 2
Query:  185 LQRQILKRTVKESKAKLNICXXXXXXXXXXXXXXXPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            LQRQ+LKR   +   +  I                PP +PPF H P+PY GPSAD+V QKRK+FLGPS+FHYYQKPLNIVEGKMQYL+DE+GRRYLDAFAGIVTVSCGHCHPD+LNAI EQSKLLQHATTIYLHHAI DFAEALA+KMPGNLKVVYFVNSG+E+NELAM+MARL TG+L MI+
Sbjct:    3 LQRQLLKRATSDIYHRRAISLLRTDFSTSPSIADAPPHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGSLEMIS 185          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT22_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 99/146 (67.81%), Postives = 122/146 (83.56%), Query Frame = 2
Query:  296 QLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            +LPPF + P PYTGPSAD +  KRK+FL PS+F  Y+KPLNIV+GKMQYLFDE+GRRYLDAFAGI  V+CGHCHPDV+  +  Q K LQH T +YL+HAIADF+EALASK+PG+LKVV+F NSGTE+NELA++MA+L TG   ++A
Sbjct:   42 RLPPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAFAGIAVVNCGHCHPDVVEPVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSGTEANELALMMAKLYTGCQDIVA 187          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT23_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 92/141 (65.25%), Postives = 119/141 (84.40%), Query Frame = 2
Query:  293 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            P++PPF++ P PY GPS  ++  KR++FL P++FH+Y  PLNIVE KMQY+FDENGRRYLDAF GI TVSCGHCHP+V+N++ +Q KL+ H+T +YL+H I+DFAEAL S +PG+LKVV+F NSGTE+NELAM+MARL TG
Sbjct:   44 PKMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMARLYTG 184          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2_PONAB (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.887e-32
Identity = 67/147 (45.58%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  293 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            P++PP D  P+ Y     ++V +  K+ L P +  Y+QKPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +T++ H  + ++AE LA+ +P  LKV++ VNSG+E+NELAMLMAR  + N+ +I+
Sbjct:   46 PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIIS 192          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2_HUMAN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.464e-32
Identity = 67/147 (45.58%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  293 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            P++PP D  P+ Y     ++V +  K+ L P +  Y+QKPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +T++ H  + ++AE LA+ +P  LKV++ VNSG+E+NELAMLMAR  + N+ +I+
Sbjct:   46 PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIIS 192          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2_BOVIN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 64/147 (43.54%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  293 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            P +PP D  P+ Y   +  +V +  KQ L P    Y+ +PL + +G +++LFD  G RYLD F+GIVTVS GHCHP V  A   Q   L H ++++ H  I ++AE L++ +P  LKVV+ VNSG+E+N+LAMLMAR  + +  +I+
Sbjct:   46 PSMPPCDFTPERYQSLAYSRVLEIHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQRQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLMARAHSNSTDIIS 192          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2_RAT (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.550e-29
Identity = 61/145 (42.07%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  299 LPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            +PP D  P+ Y   + + V +  KQ L P    Y+QKPL + +G M++LFD  G RYLD F+GIVTV  GHCHP V     +Q   L H ++++ H  + ++AE L++ +P  LKV++ VNSG+E+N+LAM+MAR  + +  +I+
Sbjct:   46 MPPCDFSPEKYQSLAYNHVLEIHKQHLSPVNTAYFQKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVGVGHCHPKVTAVAKKQMDRLWHTSSVFFHSPMHEYAERLSALLPEPLKVIFLVNSGSEANDLAMVMARAYSNHTDIIS 190          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2_MOUSE (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 61/145 (42.07%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  299 LPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            +PP D  P+ Y   +  +V    KQ L P    Y++KPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H ++++ H  + ++AE L++ +P  LKV++ VNSG+E+N+LAM+MAR  + +  +I+
Sbjct:   47 MPPCDFSPEKYQSLAYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMVMARAHSNHTDIIS 191          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L1_XENLA (Alanine--glyoxylate aminotransferase 2-like 1 OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 2
Query:  347 DQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            +++ + RK+ +GPS   ++   P+ IV  K QY+FDE G RYLD    +  V  GH HP+V  A  +Q +LL +  + +LH  +  +AE L S +P  L V YFVNSG+E+N+LA+ +AR  TG+  +I
Sbjct:    8 EKIMEIRKKHIGPSCKVFFANDPIKIVHAKGQYMFDEKGERYLDCINNVAHV--GHSHPEVTKAALKQMELL-NTNSRFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEANDLALRLARQYTGHQDVI 133          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AT2L2_MOUSE (Alanine--glyoxylate aminotransferase 2-like 2 OS=Mus musculus GN=Agxt2l2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  365 RKQFLGPSIFHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            R++ L  S   ++ + P+ I+ G+ QYL+DE GR YLD    +  V  GHCHP V+ A  EQ+ +L +  + YLH  I D+A+ L+  +P  L V YF+NSG+E+N+LA+ +AR  TG+  ++
Sbjct:   15 RRRLLSSSCRLFFPEDPVKIIRGQGQYLYDEQGREYLDCINNVAHV--GHCHPTVVQAAHEQNLVL-NTNSRYLHDNIVDYAQRLSETLPEQLSVFYFLNSGSEANDLALRLARQYTGHQDVV 134          
The following BLAST results are available for this feature:
BLAST of FC929992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
AGT21_ARATH2.203e-7372.68Alanine--glyoxylate aminotransferase 2 homolog 1, ... [more]
AGT22_ARATH2.072e-5567.81Alanine--glyoxylate aminotransferase 2 homolog 2, ... [more]
AGT23_ARATH1.028e-5465.25Alanine--glyoxylate aminotransferase 2 homolog 3, ... [more]
AGT2_PONAB1.887e-3245.58Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_HUMAN2.464e-3245.58Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_BOVIN1.953e-2943.54Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_RAT2.550e-2942.07Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_MOUSE7.420e-2942.07Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AT2L1_XENLA2.164e-2041.09Alanine--glyoxylate aminotransferase 2-like 1 OS=X... [more]
AT2L2_MOUSE1.074e-1940.65Alanine--glyoxylate aminotransferase 2-like 2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC34002F04EF PostHarvC1 Citrus clementina cDNA clone C34002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929992 ID=FC929992; Name=FC929992; organism=Citrus clementina; type=EST; length=735bp
GAAACTCACTTAACTTTGAAGTCAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCACTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAATCTGTTTTCTTTCT
TTATCTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATCT
TGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTCT
TTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGCT
GCCGCCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGATC
AAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTAT
TATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTGA
TGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTGT
CCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAGC
AAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTGA
TTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTAT
ATTTTGTCAATTCTGGGACCGAAAGCAATGAGTTAGCAATGCTAATGGCC
AGACTTTCCACAGGTAATCTTGGCATGATTGCCCT
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