FC929999

Overview
NameFC929999
Unique NameFC929999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929999_ssr127 microsatellite FC929999_ssr127:127..146. BLAST: Citrus ESTs to Prunus persica proteins V1
FC929999_ssr10 microsatellite FC929999_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 8.937e-54
Identity = 106/164 (64.63%), Postives = 131/164 (79.88%), Query Frame = 2
Query:  182 LMALNLQSPAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 658
            +M LN  SPAE KA+SFL+T+R N  +PKLSGGF L+R++     FG+ V+CS      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQV+RFKP +VAVRNESL++E+KEALA+++      PG +
Sbjct:    1 MMTLNSLSPAESKAISFLDTSRFNP-IPKLSGGFSLRRRNQGRG-FGKGVKCSVKVQQQQQPPPAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVRRFKPALVAVRNESLINELKEALADLDYKLEIIPGEQ 162          

HSP 2 Score: 29.261 bits (64), Expect = 8.937e-54
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  631 KPEILAGEQGVIEAARH 681
            K EI+ GEQGVIE ARH
Sbjct:  154 KLEIIPGEQGVIEVARH 170          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.106e-49
Identity = 103/166 (62.05%), Postives = 125/166 (75.30%), Query Frame = 2
Query:  203 SPAEIKALSFLETTRSNHRLP--KLSGGFPLKRKDNATATFGRIVQCSAQG--PPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR---ESLRLPD 679
            +P EIK LSFL++++SN+ L   K  GGF  KRKD+   T  + V CSAQ   PPPAWPGRA  E  R TW+GPKPISV+GSTGSIGTQTLDIVAE+ DKFR+VALAAGSN+TLLADQVK FKP++V+V++ESL+ E+KEALA  E+ P   PG +   E  R PD
Sbjct:    2 APTEIKTLSFLDSSKSNYNLNPLKFQGGFAFKRKDSG-CTAAKRVHCSAQSQSPPPAWPGRAFPEPGRMTWEGPKPISVIGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKAFKPKLVSVKDESLISELKEALAGFEDMPEIIPGEQGMIEVARHPD 166          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 97/169 (57.40%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  185 MALNLQS-PAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSAQGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR---ESLRLPD 679
            MAL + S P ++ A+SFL++ R      +L    P + +D    +  R      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQVK FKP++VAVRNESL+DE+KEALA+ +  P   PG +   E  R PD
Sbjct:    1 MALKVVSFPGDLAAVSFLDSNRGG-AFNQLKVDLPFQTRDRRAVSLRRTCCSMQQAPPPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKPKLVAVRNESLVDELKEALADCDWKPEIIPGEQGVIEVARHPD 168          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_MICAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.528e-22
Identity = 43/75 (57.33%), Postives = 64/75 (85.33%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 637
            K IS+LGSTGSIGTQTLDIV +H DKF+VV LA G+NI LL++Q+++F+PQ+VA+ NES L+++K  +++++ +P
Sbjct:    2 KKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTP 76          

HSP 2 Score: 29.261 bits (64), Expect = 1.528e-22
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  634 PEILAGEQGVIEAARHQMLSRGDSISVV 717
            P ILAG++GVIE AR+     GDS SVV
Sbjct:   76 PIILAGKEGVIEVARY-----GDSESVV 98          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CYAA5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.028e-20
Identity = 44/82 (53.66%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 658
            K IS+LGSTGSIGTQTLDIV ++ D+F+VV LA  SN+ LLA QV++F+P++VA+ +ES L  +K+A+A+++ SP    G +
Sbjct:    2 KKISLLGSTGSIGTQTLDIVNQYPDQFQVVGLATRSNVELLATQVQQFRPEIVAICDESKLGSLKDAIASMDYSPLILAGEQ 83          

HSP 2 Score: 31.187 bits (69), Expect = 1.028e-20
Identity = 18/28 (64.29%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  634 PEILAGEQGVIEAARHQMLSRGDSISVV 717
            P ILAGEQGV E ARH     GD+ SVV
Sbjct:   76 PLILAGEQGVAEVARH-----GDAESVV 98          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_ACAM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.739e-20
Identity = 41/80 (51.25%), Postives = 65/80 (81.25%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            K I++LGSTGSIGTQTLDIVA++ D+FR+V +AAG NI LL+ Q+++F+P++VA+ + + L ++K+A+A+V+  P+   G
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGMAAGRNIELLSQQIRQFRPEIVAIADPNQLSDLKDAIADVDPQPQLLAG 81          

HSP 2 Score: 27.335 bits (59), Expect = 1.739e-20
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  631 KPEILAGEQGVIEAARHQMLSRGDSISVV 717
            +P++LAGE GV+E A +     GD+ SVV
Sbjct:   75 QPQLLAGEAGVVEVAAY-----GDAESVV 98          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CYAP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7424) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.409e-19
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 637
            K ISVLGSTGSIGTQTLDIVA++ D+F+VV LAAG+N+ LL+ QV +F+P++VA+ N   L+ +KE+L++++ SP
Sbjct:    2 KKISVLGSTGSIGTQTLDIVAQYPDQFQVVGLAAGNNVELLSAQVHQFRPEIVAICNLDHLEVLKESLSSLDYSP 76          

HSP 2 Score: 25.7942 bits (55), Expect = 2.409e-19
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  634 PEILAGEQGVIEAARHQMLSRGDSISVV 717
            P IL GEQG++E A +     GD+ SVV
Sbjct:   76 PIILGGEQGIVEVAGY-----GDAQSVV 98          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SYNY3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechocystis sp. (strain PCC 6803) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.166e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE 631
            K IS+LGSTGSIGTQTLDIV  H D F+VV LAAG N+ LLA QV  F+P++VA+R    L+++K A+A + +
Sbjct:    3 KRISILGSTGSIGTQTLDIVTHHPDAFQVVGLAAGGNVALLAQQVAEFRPEIVAIRQAEKLEDLKAAVAELTD 75          

HSP 2 Score: 25.409 bits (54), Expect = 1.166e-18
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  631 KPEILAGEQGVIEAARHQMLSRGDSISVV 717
            +P  + GE+GV+E AR+     GD+ SVV
Sbjct:   77 QPMYVVGEEGVVEVARY-----GDAESVV 100          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_NOSP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.331e-18
Identity = 37/75 (49.33%), Postives = 60/75 (80.00%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 637
            K I+++GSTGSIGTQTLDIV ++ D+FR+V LAAG+N+ +LA Q+++F+P++ A+ +E  L  +KEA+ +++  P
Sbjct:    2 KAITLVGSTGSIGTQTLDIVTQYPDQFRIVGLAAGNNVEMLAAQIRQFRPKIAAICSEDKLPALKEAIIDLDPQP 76          

HSP 2 Score: 26.9498 bits (58), Expect = 4.331e-18
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  631 KPEILAGEQGVIEAARHQMLSRGDSISVV 717
            +P +LAGE GVIE AR+     GD+ +VV
Sbjct:   75 QPILLAGEAGVIEVARY-----GDAQTVV 98          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_PROM9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9312) GN=dxr PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 628
            K I+VLGSTGSIGTQTL+I +E  DKF+ VAL+AG NITLL +QVK  KP+VVA+ +E+L++++K+ + N++
Sbjct:    2 KYITVLGSTGSIGTQTLEIASEQPDKFKAVALSAGRNITLLTEQVKTHKPEVVAIEDENLIEDLKDNINNLD 73          
The following BLAST results are available for this feature:
BLAST of FC929999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_ARATH8.937e-5464.631-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI8.106e-4962.051-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ7.101e-4557.401-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MICAN1.528e-2257.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAA51.028e-2053.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACAM11.739e-2051.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP72.409e-1958.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNY31.166e-1857.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOSP74.331e-1849.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM92.153e-1758.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002F11EF PostHarvC1 Citrus clementina cDNA clone C34002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929999 ID=FC929999; Name=FC929999; organism=Citrus clementina; type=EST; length=720bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
ATTACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGAGAGATAAA
AAGAGGAGAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGC
AGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCA
AATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGA
TAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGAC
CTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACT
TGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGG
AACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTG
TGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAG
AGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGA
AATCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGG
GGAACAGGGAGTCATTGAGGCTGCCCGACACCAGATGCTGTCACGTGGTG
ACAGTATATCGGTTGTGCAG
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