FC930000

Overview
NameFC930000
Unique NameFC930000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15085 contig Ccv1_Contig15085:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.004e-83
Identity = 140/195 (71.79%), Postives = 168/195 (86.15%), Query Frame = 1
Query:  100 MATDTAVAEHRSSNNG--HGCCAKG-PGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSEFNVKGRWE 675
            MAT+T V    + +NG   GCC  G PGYATPL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I  KTGL++PHTAHCLA+G+ILVSCLGD++GNA+GNGFLLLDS+FN+K RWE
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSDFNIKNRWE 195          

HSP 2 Score: 29.261 bits (64), Expect = 1.004e-83
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  675 KPGHSPAFGYDF 710
            KPGHSP +GYDF
Sbjct:  196 KPGHSPLYGYDF 207          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.688e-62
Identity = 109/175 (62.29%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+ PHT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEVFWKCGLANPHTSHCLGCGEIMISSLGDPCGNGKG-GFVLLDGETFEVKGNWE 177          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.830e-61
Identity = 108/175 (61.71%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C   GPGYATPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIY+VD    PRAP LHKV+EP +I  K  L   HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEIHAKCNLGNLHTSHCLASGEVMISSLGDPQGNGKG-GFVLLDGETFEVKGTWE 178          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.390e-61
Identity = 109/175 (62.29%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIY+VD    PRAP LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDGETFEVKGTWE 178          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.122e-61
Identity = 110/175 (62.86%), Postives = 135/175 (77.14%), Query Frame = 1
Query:  157 CAK-GPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C K GPGY +PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+Y+VD    PRAP LHKVVEP +I  K  LSY HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKG-GFVLLDGETFEVKGTWE 178          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.078e-61
Identity = 107/175 (61.14%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+VD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++VS LGD  GN +G+ F+LLD E F VKG WE
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGS-FVLLDGETFEVKGTWE 178          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.084e-61
Identity = 106/175 (60.57%), Postives = 133/175 (76.00%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C   GPGY TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+VD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++V+ LGD  GN +G+ F+LLD E F VKG WE
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGS-FVLLDGETFEVKGTWE 178          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.084e-61
Identity = 107/175 (61.14%), Postives = 133/175 (76.00%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+Y+VD   +PRAP LHK VEP ++  K GL+  HT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEVYWKCGLANLHTSHCLGCGEIMISALGDPCGNGKG-GFVLLDGETFEVKGNWE 177          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.024e-60
Identity = 108/177 (61.02%), Postives = 135/177 (76.27%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWENQ 681
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIY+VD    PRA  LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD+E F VKG WE +
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRALKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDAETFEVKGTWERR 180          
BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.312e-59
Identity = 106/175 (60.57%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +GD  GN +G GF+LLD E F VKG WE
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGETFEVKGNWE 177          
The following BLAST results are available for this feature:
BLAST of FC930000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH1.004e-8371.79Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1A_XENLA3.688e-6262.29Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_RAT1.830e-6161.71Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_HUMAN2.390e-6162.29Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_BOVIN3.122e-6162.86Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_MOUSE4.078e-6161.14Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE9.084e-6160.57Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1B_XENLA9.084e-6161.14Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_PONAB2.024e-6061.02Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_XENTR1.312e-5960.57Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionC34002F12EF PostHarvC1 Citrus clementina cDNA clone C34002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930000 ID=FC930000; Name=FC930000; organism=Citrus clementina; type=EST; length=712bp
GATCAGCGTGTGATTGCGTTCTTATCATCCATTCGCTTCCTATCTTGATC
TTTCTTCAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTCTTGTAAGAAA
TGGCAACTGATACTGCGGTGGCTGAACACCGGTCGAGCAATAATGGCCAT
GGTTGCTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGTC
TGGTCCTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTG
GAAGAGAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCT
TCTTCTTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGCGA
TGAACTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATT
CATCTGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCGT
ATATACATAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATAA
AGTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCTC
ACACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGGA
GATAAGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCAGA
ATTCAATGTGAAAGGAAGATGGGAAAACCAGGTCACAGTCCTGCTTTCGG
TTATGATTTCTG
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