FC930003

Overview
NameFC930003
Unique NameFC930003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9377 contig Ccv1_Contig9377:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.964e-21
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRTG 310
            MEFWG EVK+G+PL V+P    ++HLSQASLGE KK+K  +SV L V    KKLVLGTL  E +PQ  FDLV  +        ++G
Sbjct:    1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSG 85          

HSP 2 Score: 38.5058 bits (88), Expect = 2.964e-21
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 1
Query:  286 LSHNWKNGSIYFCGYQ--TPLPMDSSDEFDMGDSDEE 390
            LSHN K+GS+YF GY+   P   +  DE D  +SDE+
Sbjct:   78 LSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED 114          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.864e-20
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVL 271
            MEFWGVEVK GQ + V P    D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL  + IP LS DLVL
Sbjct:    1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVL 75          

HSP 2 Score: 36.1946 bits (82), Expect = 1.864e-20
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 1
Query:  286 LSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQE 399
            LSH  K+ S++FCGY+     D++ +F   DS EE++E
Sbjct:   81 LSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE 116          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.526e-19
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRT 307
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  +  P + FDL+  K      T +T
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKT 82          

HSP 2 Score: 37.7354 bits (86), Expect = 1.526e-19
Identity = 16/43 (37.21%), Postives = 26/43 (60.47%), Query Frame = 1
Query:  286 LSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 414
            LSH  K  S++F GY+   P +  DE D+   DE+E+  +P++
Sbjct:   76 LSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPAV 117          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.354e-19
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRT 307
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  +  P + FDL+  K      T +T
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKT 82          

HSP 2 Score: 36.5798 bits (83), Expect = 3.354e-19
Identity = 16/43 (37.21%), Postives = 25/43 (58.14%), Query Frame = 1
Query:  286 LSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 414
            LSH  K  S++F GY+   P +  DE D+   DE+E+  +P +
Sbjct:   76 LSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPVV 117          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRTGVSTFV 325
            MEFWG+EVK+G+P+ V P    +IH+SQASLGE K +KG + VPL VK G++ LVLGTL  ENIPQL  DLV  K      T   G   FV
Sbjct:    1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFV 90          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRT 307
            MEFWG+EVK G  +K +P    I+H+SQA+LGESKK    DS  ++VK  DKKL +GTL  +  PQ+ FDLV  K      T +T
Sbjct:    1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKT 82          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRTG 310
            MEFWGVEVK G+PL + P  D ++H+SQ +LGESK     + + L+V  G  KL++GTL  E  PQLS ++VL ++ +   T + G
Sbjct:    1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNV-TEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNG 85          
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTG 301
            MEFWGV V      KV P  D+++H+SQASL  + K    +SV L V  G  KLV+GTL  +  PQ+SFDLV  K      +G
Sbjct:    1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSG 81          
The following BLAST results are available for this feature:
BLAST of FC930003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HDT1_SOLCH2.964e-2152.33Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT1_SOYBN1.864e-2056.00Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT3_MAIZE1.526e-1944.71Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT1_MAIZE3.354e-1944.71Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT1_ARATH7.719e-1854.95Histone deacetylase HDT1 OS=Arabidopsis thaliana G... [more]
HDT2_MAIZE1.609e-1549.41Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT3_ARATH6.116e-1545.35Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT2_ARATH9.139e-1145.78Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC34002G03EF PostHarvC1 Citrus clementina cDNA clone C34002G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930003 ID=FC930003; Name=FC930003; organism=Citrus clementina; type=EST; length=634bp
TCTCTATCTTACTCTCTTCACTCTAACACACGTATCCCGTCAGTCATCTT
CGATGGAGTTTTGGGGTGTTGAAGTTAAGGCTGGGCAGCCTCTTAAAGTG
AAACCTAACTTTGACAATATCATCCATCTTTCACAGGCATCACTTGGTGA
GTCAAAGAAAGAGAAAGGACATGATTCTGTGCCCCTCTTTGTGAAGTTTG
GTGACAAGAAGCTTGTTCTTGGAACACTTATCCCTGAAAATATCCCTCAA
TTATCTTTTGATCTAGTTTTGAGAAAGAGTTTGAGCTTTCTCACAACTGG
AAGAACGGGAGTATCTACTTTTGTGGTTACCAGACCCCTTTGCCTATGGA
TAGTTCAGATGAATTTGATATGGGGGACTCTGATGAAGAAGAGCAAGAGG
AGCTTCCTTCCATTACTGCTGCAGCAGAGAACGGAAAAGCTGGGCAAAAG
GCTGAGAAAGCAAAGGCTGCTACTCTCATGGCTATCCCGGCTGCTAAGCC
TGCTAAGCTGATTAAGGATGTGAAACCCAAAGAAGATGGTGACGATGAAT
CAGATGATGAAGATGACTCAGATGATGAGATGGTTGATGGAGATGATTCT
GATGAGATTTCTGGTGAGGATGATTCTGATGATG
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