FC930004

Overview
NameFC930004
Unique NameFC930004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15086 contig Ccv1_Contig15086:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.543e-85
Identity = 161/227 (70.93%), Postives = 182/227 (80.18%), Query Frame = 3
Query:   78 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA 755
            MAM +   R++++ KRS KK++EE LY+RLFK GG++V VRQQLNQFLK  K VFKWEVGDT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK + I A ENYFVDLPETSK  LTYGSLLNCYCKEL+T                 SSM +NSLMTLY KTG  EK+PA+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA
Sbjct:    1 MAM-RHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVA 226          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.366e-33
Identity = 77/216 (35.65%), Postives = 123/216 (56.94%), Query Frame = 3
Query:   99 GRTKNIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743
            G   ++A  +    +  LY +L     +  +V + LNQF+     V K ++    K LR  +    A ++ + MEKR M  +VSD AI LDL+ K +G++AAENYF +L  ++KNH  TYG+L+NCYC EL                   +S+PFN++M++Y +   PEK+P ++  MK   I P   TY++WM++  ++ND+ G E++I+EM +D
Sbjct:   56 GVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKD 271          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.003e-32
Identity = 79/215 (36.74%), Postives = 124/215 (57.67%), Query Frame = 3
Query:  111 NIAKRSKKHLEEALYDRLFK---KGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746
            ++  ++KKH   ++Y +L     +GG    + + LNQF+     V K ++    K LR  +    AL++ E ME++ +  T SD AI L+L+AK +G++AAE YF  L ++ KN  TYGSLLNCYC E                    +S+PFN+LM +Y   G PEK+PA++  MK  SI P   TY++W+++  ++ D+ G E+V++EMK +G
Sbjct:   30 SVPTKAKKH--RSIYKKLSSLGTRGGG--KMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEG 240          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26
Identity = 66/201 (32.84%), Postives = 104/201 (51.74%), Query Frame = 3
Query:  147 ALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743
            A+Y ++      ++     LNQ+ K+ +++ KWE+   +K+LR  K    AL++ + M  RG     + SD AI LDL+ KV+GI  AE +F+ LPE  K+   YGSLLN Y +                       +PFN +MTLY      +K+ A++ EMK   I  D Y+YN+W+ +  ++  +   E V ++MK D
Sbjct:   68 AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSD 268          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.900e-25
Identity = 63/198 (31.82%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  150 LYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 740
            LY ++   G    SV  +L  +++  K+V   E+   +  LR RK +  AL++S+ M + G+   + ++ A+HLDL+ +V G   AE YF +L E  KN  TYG+LLNCY ++                    SS+ +N++M LY   G  EK+P +++EMK  ++ PD+Y+Y + + A  A+ D+      + +M+R
Sbjct:   27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMER 224          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 55/171 (32.16%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  234 VFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743
            V K+E+   +++LR  K Y  AL++ E M  +  +     D A+HLDL++K++G+++AE +F D+P+  + H    SLL+ Y +  ++                 S +P+N ++++Y   G  EK+P +I+E+K  +  PD  TYN+W+ A A+ ND+ GAE+V  + K +
Sbjct:   91 VRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEE 260          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.218e-21
Identity = 64/203 (31.53%), Postives = 106/203 (52.22%), Query Frame = 3
Query:  141 EEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXX-GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743
            ++ L  R+F+      S    L +++    ++   E+ +  K+LR  + Y  AL+++E M +   +K + +D A  +DL++KV GIDAAE YF  L   SK   TY SLL+ Y     T                 F ++ +N +MTLY   G  EK+P +I+ +K   + PD +TYN+W+ + AA  +I    +++EEM+ D
Sbjct:   54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHD 256          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.489e-19
Identity = 55/201 (27.36%), Postives = 102/201 (50.75%), Query Frame = 3
Query:  144 EALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743
            + L  R+ + G    S+ + L+ +L     V   E+   +K LR    +  AL++S+ M +  +++ +  D AI LDL+AKV G+  AE +F  +P   +N+  YG+LLNCY  + +                    +P+N ++ LY +TG    +  +++EM+  ++ PD +T N  + A + V+D+ G E+ +   + D
Sbjct:   38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEAD 238          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 65/221 (29.41%), Postives = 99/221 (44.80%), Query Frame = 3
Query:  105 TKNIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN----HLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 752
            T ++A R+   L+E L     +K G   SV   L + + S   V   E+    K+L     Y  AL++ E ME ++ +  +V D A+ LDL+ K  G+   E YF  L  +S +       Y  LL  Y K  M                  +  PFN +M LY  +G  EK+  ++  MK + I  +  +YN+WM A   V+ ++  E V +EM  D  V
Sbjct:   32 TSSVANRNS--LKEIL-----RKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSV 245          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 3
Query:  195 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 731
            RQQ NQ   S  RV        +KKLRD      AL++SE M K  + N    D A  L L+  V G++ AE +F  +P+ ++    Y SLLN Y +   T                    +P+N++M+LY+   + EK+  ++ EMK + +  D+ T N  ++  +AV D++  E+ + +
Sbjct:   60 RQQGNQVNPSHVRVI-------IKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNK 233          
The following BLAST results are available for this feature:
BLAST of FC930004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PPR86_ARATH4.543e-8570.93Pentatricopeptide repeat-containing protein At1g60... [more]
PPR4_ARATH2.366e-3335.65Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH2.003e-3236.74Pentatricopeptide repeat-containing protein At4g01... [more]
PPR3_ARATH2.801e-2632.84Pentatricopeptide repeat-containing protein At1g02... [more]
PP334_ARATH6.900e-2531.82Pentatricopeptide repeat-containing protein At4g21... [more]
PP302_ARATH3.205e-2232.16Pentatricopeptide repeat-containing protein At4g02... [more]
PP372_ARATH1.218e-2131.53Pentatricopeptide repeat-containing protein At5g09... [more]
PP166_ARATH1.489e-1927.36Pentatricopeptide repeat-containing protein At2g20... [more]
PP400_ARATH4.196e-1429.41Pentatricopeptide repeat-containing protein At5g27... [more]
PPR61_ARATH2.720e-1329.83Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC34002G04EF PostHarvC1 Citrus clementina cDNA clone C34002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930004 ID=FC930004; Name=FC930004; organism=Citrus clementina; type=EST; length=760bp
GGAAGGAATGCGAAAACACAAAACGAGCAGAGCGGGGGGTTTAGATTTTA
GGGTTTAGAGAAAGCTAAAGAAGAAAAATGGCGATGCCGCAACGGTTTGG
GAGGACCAAGAACATAGCAAAGCGGTCGAAGAAGCACTTGGAAGAAGCGC
TTTACGACAGGCTATTCAAAAAAGGTGGCTCCGACGTTAGCGTTCGACAG
CAGCTGAACCAGTTTCTCAAGAGCAAAAAACGTGTCTTCAAATGGGAAGT
CGGCGACACTCTCAAGAAGCTTCGCGATCGCAAGCTCTATTACCCTGCCC
TCAAGTTATCAGAAAATATGGAAAAGAGGGGTATGAACAAGACAGTCAGT
GATCAAGCTATTCATCTTGATCTAGTTGCCAAAGTTCAAGGTATTGATGC
TGCAGAAAACTATTTTGTTGATCTTCCTGAAACATCAAAGAACCATCTTA
CATATGGTTCTCTTCTGAATTGCTACTGCAAGGAATTGATGACTGAAAAA
GCAGAAGCTCTCTTGGAGAAGATGAAGGAACTTAACCTTGGGTTTAGCTC
CATGCCTTTTAACAGCCTCATGACCCTTTATGCAAAGACTGGCCACCCAG
AAAAAATACCAGCCATTATACAAGAAATGAAGGCGTCGAGTATCATGCCA
GACTCATACACATACAATGTCTGGATGAGGGCTCTGGCTGCTGTCAATGA
TATTTCTGGGGCTGAGAGAGTCATTGAAGAGATGAAGAGGGATGGTCGGG
TTGCTGCTGA
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