FC930006

Overview
NameFC930006
Unique NameFC930006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ATTY_MOUSE (Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.772e-51
Identity = 94/210 (44.76%), Postives = 139/210 (66.19%), Query Frame = 3
Query:   30 DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAVPSILQQPDEVFFKKLLIY 659
            DV +TSGC+QAI++ +A+L+ PG NIL+PRPGF +Y   A    IEV+ ++LLP+K WE+DL  +ESL D+ T  LV+ NP NPCG+V+S +HLQK+   A +    ++ADE+YG +VF D  + PM    + VPIL+ G L+KRW+VPGWRLGW +  D   +F   ++ + + K    +  P T +Q A+ SILQ+  + F++  L +
Sbjct:  137 DVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGN-EIRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSF 345          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ATTY_BOVIN (Tyrosine aminotransferase OS=Bos taurus GN=TAT PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.233e-51
Identity = 94/210 (44.76%), Postives = 138/210 (65.71%), Query Frame = 3
Query:   30 DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAVPSILQQPDEVFFKKLLIY 659
            DV +TSGC+QAI++ +A+L+ PG NIL+PRPGF +Y   A    IEV+ ++LLP+K WE+DL  +ESL D+ TV L++ NP NPCG+V+S +HLQK+   A +    ++ADE+YG +VF D  F P+    S VPIL+ G L+KRW+VPGWR+GW +  D   +F   ++ + + K    +  P T +Q A+ SIL +   VF+   L +
Sbjct:  130 DVILTSGCSQAIELCLAVLANPGQNILVPRPGFSLYRTLAESMGIEVKLYNLLPEKNWEIDLKQLESLIDEKTVCLIVNNPSNPCGSVFSRRHLQKILAVAARQCVPILADEIYGDMVFSDSKFEPLATLSSKVPILSCGGLAKRWLVPGWRMGWILIHDRRDIFGN-EIRDGLTKLSQRILGPCTLVQGALKSILCRTPRVFYHNTLSF 338          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ATTY_RAT (Tyrosine aminotransferase OS=Rattus norvegicus GN=Tat PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.040e-50
Identity = 93/210 (44.29%), Postives = 138/210 (65.71%), Query Frame = 3
Query:   30 DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAVPSILQQPDEVFFKKLLIY 659
            DV +TSGC+QAI++ +A+L+ PG NIL+PRPGF +Y   A    IEV+ ++LLP+K WE+DL  +ESL D+ T  LV+ NP NPCG+V+S +HLQK+   A +    ++ADE+YG +VF D  + P+    + VPIL+ G L+KRW+VPGWRLGW +  D   +F   ++ + + K    +  P T +Q A+ SILQ+  + F+   L +
Sbjct:  137 DVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKYEPLANLSTNVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGN-EIRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYHDTLSF 345          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ATTY_HUMAN (Tyrosine aminotransferase OS=Homo sapiens GN=TAT PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.697e-48
Identity = 91/210 (43.33%), Postives = 136/210 (64.76%), Query Frame = 3
Query:   30 DVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAVPSILQQPDEVFFKKLLIY 659
            DV +TSGC+QAID+ +A+L+ PG NIL+PRPGF +Y+  A    IEV+ ++LLP+K WE+DL  +E L D+ T  L++ NP NPCG+V+S +HLQK+   A +    ++ADE+YG +VF D  + P+    + VPIL+ G L+KRW+VPGWRLGW +  D   +F   ++ + + K    +  P T +Q A+ SIL +    F+   L +
Sbjct:  137 DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGN-EIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSF 345          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ATTY_DICDI (Tyrosine aminotransferase OS=Dictyostelium discoideum GN=tat PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 79/201 (39.30%), Postives = 128/201 (63.68%), Query Frame = 3
Query:   15 QVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAVPSIL 617
            +++  D+ V SG + AI++A+ +L   G NIL+P+PGFP+YE ++  + I V+H++LL  +G+ VDL+ + SL D  T A+++ NP NPCG VYS QHL  + + A +    +IADE+Y  L FG+  F PM      VPIL++G ++KR++VPGWRLGW    D   +F   +++E +     ++  P + +Q+ +P +L
Sbjct:  101 KLTSKDIIVASGASGAIELAIGVLLNEGDNILVPKPGFPLYECTSKTKFINVKHYNLLEKQGFNVDLEHLRSLIDDKTKAILVNNPSNPCGIVYSKQHLLDIIQVAREYCLPIIADEIYSDLTFGEHKFYPMASLTDKVPILSIGGIAKRFLVPGWRLGWVAIHDRDNIFSNGRIIEGLISLSQVILGPNSLVQSILPKLL 301          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: ATTY_TRYCR (Tyrosine aminotransferase OS=Trypanosoma cruzi PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 72/207 (34.78%), Postives = 115/207 (55.56%), Query Frame = 3
Query:   27 NDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDK----PFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDPCGMFRKPKVVERMKKYFDILGDPATFIQAAV-PSILQQPDE 632
            ++V + SG +  I +A+  +   G   L+P+PGFP YE       I +  ++  P+  WE DLD+I  L D  T  L++ NP NPCG+ +S +H++ +   A +L+  + +DE+Y  +VF  K     F  +  F +TVP + LG  +K  +VPGWRLGW +  DP G    P  +E +K+   ++  P T +QAA+  ++L  P E
Sbjct:  105 DNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG--NGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQE 309          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_MYCTU (Probable aspartate aminotransferase OS=Mycobacterium tuberculosis GN=aspC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 52/162 (32.10%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   27 NDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDP 512
            +DV++ +G ++ I + +  L   G  +L+P P +P++  S +       H+     +GW+ D+ D+ES   + T ALV+INP NP G VYS + L ++ + A K + L++ADE+Y  +++ D   + +      +  LT   LSK + V G+R GW   T P
Sbjct:  121 DDVYLGNGVSELITMTLQALLDNGDQVLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLESKITERTKALVVINPNNPTGAVYSCEILTQMVDLARKHQLLLLADEIYDKILYDDAKHISLASIAPDMLCLTFNGLSKAYRVAGYRAGWLAITGP 282          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: AAT_MYCBO (Probable aspartate aminotransferase OS=Mycobacterium bovis GN=aspC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 52/162 (32.10%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   27 NDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDP 512
            +DV++ +G ++ I + +  L   G  +L+P P +P++  S +       H+     +GW+ D+ D+ES   + T ALV+INP NP G VYS + L ++ + A K + L++ADE+Y  +++ D   + +      +  LT   LSK + V G+R GW   T P
Sbjct:  121 DDVYLGNGVSELITMTLQALLDNGDQVLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLESKITERTKALVVINPNNPTGAVYSCEILTQMVDLARKHQLLLLADEIYDKILYDDAKHISLASIAPDMLCLTFNGLSKAYRVAGYRAGWLAITGP 282          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: Y286_HAEIN (Uncharacterized aminotransferase HI0286 OS=Haemophilus influenzae GN=HI0286 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 52/167 (31.14%), Postives = 88/167 (52.69%), Query Frame = 3
Query:   12 LQVSPNDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVFGSTVPILTLGSLSKRWIVPGWRLGWFVTTDP 512
            L  + NDV++ +G ++ I +AM  L   G  +L+P P +P++  +      +  H+    D  W   +DDI++  +  T A+VIINP NP G VYS + LQ++ E A +   ++ ADE+Y  +++       +      +  +TL  LSK + V G+R GW +   P
Sbjct:   91 LGATVNDVYIGNGVSELITMAMQALLNDGDEVLVPMPDYPLWTAAVTLSGGKAVHYLCDEDANWFPTIDDIKAKVNAKTKAIVIINPNNPTGAVYSKELLQEIVEIARQNNLIIFADEIYDKILYDGAVHHHIAALAPDLLTVTLNGLSKAYRVAGFRQGWMILNGP 257          
BLAST of FC930006 vs. ExPASy Swiss-Prot
Match: YUGH_BACSU (Putative aminotransferase yugH OS=Bacillus subtilis GN=yugH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 3
Query:   12 LQVSP-NDVFVTSGCTQAIDVAMALLSRPGANILLPRPGFPIYELSAAFRHIEVRHFDLLPDKGWEVDLDDIESLADQNTVALVIINPGNPCGNVYSYQHLQKLAETANKLKTLVIADEVYGHLVFGDKPFVPMGVF-GSTVPILTLGSLSKRWIVPGWRLGW 494
            L  SP N++ VT G +QA+D+A+  +  PG  +++P P F  Y+   +       H     DKG++    D E+   + T A++I +P NP G+VYS + L ++AE A K   +V+ADE+Y  L + D+ F  +    G     + +   SK + + GWRLG+
Sbjct:   84 LSYSPDNELIVTVGASQALDIAIRAIVNPGEEVIIPEPCFVAYDALVSLAGGIPVHVHTTADKGFKATAADFEAAVTEKTKAILICSPSNPTGSVYSKEELNEIAEFAKKHDVIVLADEIYAELTY-DEEFTSIAALPGMKERTVVISGFSKAFAMTGWRLGF 245          
The following BLAST results are available for this feature:
BLAST of FC930006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ATTY_MOUSE4.772e-5144.76Tyrosine aminotransferase OS=Mus musculus GN=Tat P... [more]
ATTY_BOVIN6.233e-5144.76Tyrosine aminotransferase OS=Bos taurus GN=TAT PE=... [more]
ATTY_RAT4.040e-5044.29Tyrosine aminotransferase OS=Rattus norvegicus GN=... [more]
ATTY_HUMAN1.697e-4843.33Tyrosine aminotransferase OS=Homo sapiens GN=TAT P... [more]
ATTY_DICDI2.804e-4339.30Tyrosine aminotransferase OS=Dictyostelium discoid... [more]
ATTY_TRYCR2.462e-3134.78Tyrosine aminotransferase OS=Trypanosoma cruzi PE=... [more]
AAT_MYCTU1.600e-2232.10Probable aspartate aminotransferase OS=Mycobacteri... [more]
AAT_MYCBO1.600e-2232.10Probable aspartate aminotransferase OS=Mycobacteri... [more]
Y286_HAEIN1.769e-2131.14Uncharacterized aminotransferase HI0286 OS=Haemoph... [more]
YUGH_BACSU1.146e-2033.13Putative aminotransferase yugH OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionC34002G06EF PostHarvC1 Citrus clementina cDNA clone C34002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930006 ID=FC930006; Name=FC930006; organism=Citrus clementina; type=EST; length=694bp
CGTGATCTTCCTTACAAGTTTCACCCAATGATGTCTTTGTCACATCCGGC
TGCACACAAGCCATTGATGTTGCTATGGCACTGCTTTCTCGCCCTGGTGC
AAACATCTTGCTTCCAAGACCAGGGTTTCCCATCTATGAACTTTCTGCTG
CCTTTAGGCATATTGAAGTTCGGCATTTTGATCTTCTGCCCGATAAAGGC
TGGGAGGTGGATCTTGATGATATTGAATCTCTTGCAGATCAAAACACTGT
TGCATTGGTAATTATAAACCCTGGGAATCCTTGTGGAAACGTGTACTCTT
ACCAACATTTGCAGAAGCTTGCAGAGACTGCGAACAAGCTAAAAACTCTC
GTTATAGCCGATGAAGTTTATGGGCACCTTGTTTTTGGGGATAAGCCGTT
TGTGCCGATGGGAGTTTTTGGGTCAACTGTTCCTATTCTTACACTTGGAT
CTTTATCCAAGAGATGGATAGTACCTGGATGGCGACTTGGTTGGTTTGTC
ACAACTGATCCATGTGGCATGTTTAGAAAACCCAAGGTCGTTGAGCGTAT
GAAGAAATACTTTGATATTTTGGGGGACCCTGCAACCTTTATCCAGGCAG
CAGTTCCTAGTATTCTTCAGCAGCCTGATGAGGTTTTCTTTAAGAAACTC
TTAATTTATTGAAACAGAGTGTAGATATATGTTACAATAAGATA
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