FC930007

Overview
NameFC930007
Unique NameFC930007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930007 vs. ExPASy Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 3
Query:   93 SITLSTPVWPTIDGPLGLTEDDSLSYARKFYQFGFALLPFLWAVNCFYFWPVLRHSASFPRIRHCKLSQSLSLHFDFKLFALKFRCWVTFF 365
            +I  S  VWPTIDGPLGLTE+ S+ YAR+FY+FGFALLP+LW VNCFYFWPVLRHS +FP+IR+  +  ++     F +F      W   F
Sbjct:   30 TIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIG----FSVFTALLSAWALTF 116          
The following BLAST results are available for this feature:
BLAST of FC930007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PEN2_ARATH2.990e-2456.04Probable gamma-secretase subunit PEN-2 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC34002G07EF PostHarvC1 Citrus clementina cDNA clone C34002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930007 ID=FC930007; Name=FC930007; organism=Citrus clementina; type=EST; length=703bp
GGATTCCCGTTTTTTGCTCTTGCGGTCAAATGGACGCGTCACAGAGCAAC
GACCGGATTCCGAATCCGAACCCGAGGGGTAATAATGGGAACTCGATAAC
GTTGTCCACGCCGGTGTGGCCAACGATCGACGGGCCGTTGGGTTTAACGG
AAGACGATTCATTGAGCTACGCTCGCAAATTCTATCAGTTCGGTTTCGCA
CTGCTGCCGTTTCTTTGGGCTGTCAATTGCTTCTACTTCTGGCCTGTTCT
TCGCCACTCCGCCTCTTTCCCTCGTATTCGCCACTGTAAGCTTTCCCAAT
CGCTGTCGCTTCATTTTGATTTTAAGTTATTTGCATTGAAATTTCGTTGT
TGGGTAACATTTTTTTTTAACCTACGCTGAGGTTTGGCTAAATTATAGAA
AGGTTTTACTAGTTTTGAAATTTTTCATATACGTCCTTGACAGTATCTCA
TTACATTGTGATGAATCCTTTGGTCTAATAGTAAATTGAAATCTTACAAC
CAAATGTACTATGTATGTAACTGCTGTGCTTGTGCTTGTATCCTCTGATA
TACAGGATTAGCTTGTTGAGTCTTAATAGTCTGGATGGGTCTGTCCTCAC
TATCAAAAGTAACTCCATTGTTGTCTGGTACCGTTGGAGAATTTGGGAGG
TGGTTGATTGGTAGATTGGTTGAGTTATACATCTTTGGCGATGGTTTATT
TTT
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