FC930009

Overview
NameFC930009
Unique NameFC930009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10257 contig Ccv1_Contig10257:14..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.904e-91
Identity = 162/190 (85.26%), Postives = 181/190 (95.26%), Query Frame = 1
Query:   97 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            PDHLFNLRNNFYLGAYQ AINNS++ NL P++AVERDCLV+RSYIALGSYQLVISEIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D  IG+N TLRLIAGI+FMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIF+
Sbjct:    8 PDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFE 197          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.484e-90
Identity = 159/190 (83.68%), Postives = 181/190 (95.26%), Query Frame = 1
Query:   97 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            PDHLFNLRN+FYLGAYQAAINNS++ NL  +D VERDCLV+R+YIALGSYQLVISEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+N  +RLIAG +FMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIFQ
Sbjct:    7 PDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQ 196          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.392e-80
Identity = 151/190 (79.47%), Postives = 169/190 (88.95%), Query Frame = 1
Query:   97 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            PD LFNLRN FYLGAYQAAINNSD+  L  D A ERD +V+RSY+ALGSYQLVISEID SAAT LQAVKLLALYLS   +KES I SLKEWLSD A+GSN  LRLIAGI+FMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AVGGSKI+EAYLIFQ
Sbjct:    4 PDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQ 191          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.680e-65
Identity = 130/195 (66.67%), Postives = 150/195 (76.92%), Query Frame = 1
Query:   97 PDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            PDHLF LRN+FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LL +YLS     KES I  L E L+D A+GSN  LRL+AG V MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQ
Sbjct:    7 PDHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQ 201          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.071e-64
Identity = 130/195 (66.67%), Postives = 150/195 (76.92%), Query Frame = 1
Query:   97 PDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            PDHLF LR +FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LLA+YLS     KES I  L E L+D A+GSN  LRL+AG V MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQ
Sbjct:    7 PDHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQ 201          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.033e-39
Identity = 84/190 (44.21%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF+++N FY+G+YQ  IN +    L  PD  VERD  +YR+YIA   Y +V+ EI  S+A  LQAV++ A YL++ + +++ +  L   +S     +N T  L+A  V+ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQ 206          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.530e-39
Identity = 83/190 (43.68%), Postives = 123/190 (64.74%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S + ++S +  L   +S     +N T  L+A  ++ H+++ + AL+  + G  +E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQ 206          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.916e-39
Identity = 80/190 (42.11%), Postives = 128/190 (67.37%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF+++N+FY+GAYQAAIN +  +    P+   ERD  ++RSYIA   Y +V+ EI  +A+  LQAV++ A YLS+   +++ ++ L + ++     +N T  L+A  ++ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG K+Q+AY IFQ
Sbjct:   17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQ 206          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.008e-38
Identity = 79/190 (41.58%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  +++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQ 206          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.541e-38
Identity = 79/190 (41.58%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  +++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQ 206          
The following BLAST results are available for this feature:
BLAST of FC930009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE2_ARATH3.904e-9185.26Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ARATH1.484e-9083.68Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ1.392e-8079.47Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ3.680e-6566.67Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI1.071e-6466.67Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CRIGR2.033e-3944.21Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_MOUSE4.530e-3943.68Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_CHICK5.916e-3942.11Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_PONAB5.008e-3841.58Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN6.541e-3841.58Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]

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Properties
Property NameValue
Genbank descriptionC34002G09EF PostHarvC1 Citrus clementina cDNA clone C34002G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930009 ID=FC930009; Name=FC930009; organism=Citrus clementina; type=EST; length=725bp
GCTGCGCGTTGGAGTTGAAGAAGGGATCCAATCTAAATCAAAGAAGCAAT
CGATCAAGAAGCGAAAAAGGAATAAAGAATGGCAGCGGCAGCAGCACCAG
ATCACTTGTTCAATCTGAGAAACAACTTCTACTTGGGGGCGTATCAGGCC
GCTATCAACAACAGCGACCTCACCAATCTTCCACCAGACGACGCCGTTGA
GCGTGACTGCCTCGTCTACCGCTCTTACATTGCCCTTGGCAGTTACCAGC
TTGTGATCAGTGAGATCGATGAGTCGGCTGCTACTCCTCTCCAAGCCGTG
AAGTTGCTTGCTCTCTATCTCTCTAGCCCTGACAACAAGGAATCAACAAT
TTCAAGTTTAAAAGAGTGGTTGTCAGATCCAGCCATTGGGAGCAATGTGA
CATTACGCTTGATTGCTGGTATCGTATTCATGCATGAAGAGGATTATAAT
GAGGCACTCAAACACACCAATGCTGGAGGGACCATGGAATTACATGCATT
GAATGTCCAAATATTCCTTAAGATGCACAGGTCTGACTATGCAGAGAGAC
AGCTGAGGGCCATGCAACAGATTGATGAGGACCACACCCTAACTCAACTC
GCAAATGCTTGGTTGAATTTGGCAGTGGGTGGTTCCAAGATACAGGAAGC
ATATCTCATCTTTCAGATTTCTCTGAGAAGTATCCATGACAGGGNTGATC
TTGATGGAAAGCTGTTGCTGCATGC
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