FC930011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42 Identity = 91/202 (45.05%), Postives = 128/202 (63.37%), Query Frame = 2 Query: 146 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW------AXKGATSGDEKQVQI--------PKCCRAYNG 700 R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV+ TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW A K + KQ++ PK C Y G Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCG 210 HSP 2 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 48/189 (25.40%), Postives = 84/189 (44.44%), Query Frame = 2 Query: 131 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-------------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 628 D S V+VG++ P++T ++ F+ G + +++K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T + V+ G ++ +TD + FS F + RV +G+ FV F E A AI +NG + ++C W Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 274
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40 Identity = 91/219 (41.55%), Postives = 127/219 (57.99%), Query Frame = 2 Query: 146 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW------AXKGATSGDEKQVQI--------PKCCRAYNG 700 R++YVGN+ VT L+ ++FS GP + CK+I + S Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV+ TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW A K + KQ++ PK C Y G Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCG 227 HSP 2 Score: 71.633 bits (174), Expect = 4.553e-12 Identity = 48/189 (25.40%), Postives = 84/189 (44.44%), Query Frame = 2 Query: 131 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-------------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 628 D S V+VG++ P++T ++ F+ G + +++K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T + V+ G ++ +TD + FS F + RV +G+ FV F E A AI +NG + ++C W Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 291
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39 Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 2 Query: 146 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637 +++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184 HSP 2 Score: 68.5514 bits (166), Expect = 3.855e-11 Identity = 44/182 (24.18%), Postives = 83/182 (45.60%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 628 V+VG++ P++T ++ F+ G + +++K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++ + + V+ G ++ +T+ + FS F + RV +G+ FV F + E A AI +NG + ++C W Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39 Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 2 Query: 146 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637 +++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184 HSP 2 Score: 68.9366 bits (167), Expect = 2.951e-11 Identity = 43/182 (23.63%), Postives = 80/182 (43.96%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------------YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 628 V+VG++ P++T ++ F+ G + +++K YGFV +F++ A AI + G+ + G+ I+ NWA Y + + + V+ G ++ +T+ + FS F + RV +G+ FV F + E A AI +NG + ++C W Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32 Identity = 70/167 (41.92%), Postives = 104/167 (62.28%), Query Frame = 2 Query: 146 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637 R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A+ TLNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+ VMW +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWA K Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQIPKCCRAYNGIS 706 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ + A N +S Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQIPKCCRAYNGIS 706 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ + A N +S Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQIPKCCRAYNGIS 706 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ + A N +S Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 58/188 (30.85%), Postives = 98/188 (52.13%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQIPKCCRAYN 697 ++YVG + +V+ ++L E+ GP+ + K + +GFV++ A AI LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F ++M +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G+ + A N Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQN 199
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG++HP+VT A+L E FS GP+ ++ I + Y +V+Y A A+ TLN I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F +V +K +G+GFV F+ QE A+ AI+ +NG +L R+I Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159 The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bpback to top |