FC930014

Overview
NameFC930014
Unique NameFC930014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15069 contig Ccv1_Contig15069:59..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25
Identity = 73/236 (30.93%), Postives = 122/236 (51.69%), Query Frame = 1
Query:   85 ATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLYSNWI-----SWTFTIILN-ISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCIKSHHFW 774
            A + ++LT   S  ++ +H + + +P+ QK              DS++ L  + G     +++++ +ECYEA VI  F+  L +YL       ++  E K +  H  FP     P  A +    L   K    Q+ V+RP  +I+ +  +LLG+Y         +WT+ +I+N +S   A+Y L++FY V  +EL+P +P+ KFLC+K +VF  FWQ +V+ +LV  G I   H W
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL-KYPG---IAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKH--FPPLCCCPPWA-MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTW 280          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184C_HUMAN (Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.120e-25
Identity = 72/236 (30.51%), Postives = 122/236 (51.69%), Query Frame = 1
Query:   85 ATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLYSNWI-----SWTFTIILN-ISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCIKSHHFW 774
            A + ++LT   S  ++ +H + + +P+ QK              DS++ L  + G     +++++ +ECYEA VI  F+  L +YL       ++  E K +  H  FP     P  A +    L   K    Q+ V+RP  +I+ +  +LLG+Y         +WT+ +I+N +S   A+Y L++FY V  +EL+P +P+ KFLC++ +VF  FWQ +V+ +LV  G I   H W
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL-KYPG---IAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKH--FPPLCCCPPWA-MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVRLVVFVSFWQAVVIALLVKVGVISEKHTW 280          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.299e-25
Identity = 70/236 (29.66%), Postives = 120/236 (50.85%), Query Frame = 1
Query:   85 ATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLYSNWI-----SWTFTIILN-ISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCIKSHHFW 774
            A + ++LT   S  ++ +H + + +P+ QK              DS++ L       +  +++++ +ECYEA VI  F+  L +YL       ++  E K +  H   P+    P T  +    L   K    Q+ V+RP  +I+ +  +LL +Y         +WT+ +I+N +S   A+Y L++FY V  +EL+P +P+ KFLC+K +VF  FWQ +V+ +LV  G I   H W
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPSIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLIIEAKDQQKHFP-PLCCCPPWT--MGEVLLFRCKLGVLQYTVVRPFTTIIALVCELLDIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTW 280          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.299e-25
Identity = 72/220 (32.73%), Postives = 114/220 (51.82%), Query Frame = 1
Query:  139 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHS--FPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCIKSHH 768
            H   +  P EQ+              DS++ L+ F   + ++++  +V++CYEALVI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y        S ++    TII NISVSLALY+L +FY    + L+P+ P+ KF  +K ++F  FWQG++L IL   G I   H
Sbjct:   68 HLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLY--VTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIH 279          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.299e-25
Identity = 72/220 (32.73%), Postives = 114/220 (51.82%), Query Frame = 1
Query:  139 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHS--FPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCIKSHH 768
            H   +  P EQ+              DS++ L+ F   + ++++  +V++CYEALVI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y        S ++    TII NISVSLALY+L +FY    + L+P+ P+ KF  +K ++F  FWQG++L IL   G I   H
Sbjct:   68 HLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLY--VTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIH 279          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184B_MOUSE (Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.706e-24
Identity = 70/216 (32.41%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  139 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHS--FPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCI 756
            H   + +P EQ+              DS++ L+ F   + ++++  +V++CYEA VI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y        S ++    TII NISVSLALY+L +FY    + L+P+ P+ KF  +K ++F  FWQG++L IL   G I
Sbjct:   68 HLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEAFVIYNFLSLCYEYLG---GESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSGYLY--VTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAI 275          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.706e-24
Identity = 82/250 (32.80%), Postives = 125/250 (50.00%), Query Frame = 1
Query:   31 FLTRILATMNPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCI 756
            FLT  LA      V+ +     ++LT H   Q+ S H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL L + YL     ++ +  EI+G+ I  S        R    +   L+  K  T QF +++PV +++ I LQ    Y        S ++    T++ N SVSLALY+L +FY      L P +P+ KFL IK I+F  FWQG++L IL   G I
Sbjct:   52 FLTSALAR----GVSGVFVWTALLLTGH---QIYS-HLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYLY--VTLVYNASVSLALYALFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAILERCGVI 287          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.706e-24
Identity = 72/214 (33.64%), Postives = 110/214 (51.40%), Query Frame = 1
Query:  139 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCI 756
            H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL+L + YL     +  +  EI+G+ I  S        R    +   L+  K  T QF +++PV ++  I LQ  G Y        S ++    T+I N SVSLALY+L +FY    + L P +P+ KFL IK ++F  FWQG++L IL   G I
Sbjct:   77 HLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLY--VTLIYNASVSLALYALFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVI 284          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.534e-24
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1
Query:   73 TFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLYSNWI-----SWTFTIILN-ISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCIKSHHFW 774
            ++  A + ++LT   S   + +H + + +P+ QK              DS+V L+         +++++ +ECYEA VI  F+  L +YL I     I+  E K +  +H  P+    P    +    L   K    Q+ V+RP+ ++  +  ++L +Y         +WT+ +ILN +S   A+Y L++FY V  +EL+P +P+ KFLC+K +VF  FWQ +++ +LV  G I     W
Sbjct:   48 SWFIAGIFLLLTIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALV----YPKIAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLILHLEAKDQQ-NHILPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTALVCEILDVYDEGNFGFSNAWTYLVILNNLSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKLGVISEKRTW 280          
BLAST of FC930014 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.534e-24
Identity = 82/250 (32.80%), Postives = 125/250 (50.00%), Query Frame = 1
Query:   31 FLTRILATMNPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGRDIHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY--------SNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQGIVLDILVAFGCI 756
            FLT  LA      V+ +     ++LT H   Q+ S H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL L + YL     ++ +  EI+G+ I  S        R    +   L+  K  T QF +++PV +++ I LQ    Y        S ++    T++ N SVSLALY+L +FY      L P +P+ KFL IK I+F  FWQG++L IL   G I
Sbjct:   52 FLTSALAR----GVSGVFVWTALLLTGH---QIYS-HLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYLY--VTLVYNASVSLALYALFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAILERCGVI 287          
The following BLAST results are available for this feature:
BLAST of FC930014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
T184C_PONAB3.196e-2530.93Transmembrane protein 184C OS=Pongo abelii GN=TMEM... [more]
T184C_HUMAN7.120e-2530.51Transmembrane protein 184C OS=Homo sapiens GN=TMEM... [more]
T184C_BOVIN9.299e-2529.66Transmembrane protein 184C OS=Bos taurus GN=TMEM18... [more]
T184B_HUMAN9.299e-2532.73Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN9.299e-2532.73Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184B_MOUSE2.706e-2432.41Transmembrane protein 184B OS=Mus musculus GN=Tmem... [more]
T184A_MOUSE2.706e-2432.80Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]
T184A_HUMAN2.706e-2433.64Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184C_MOUSE3.534e-2428.75Transmembrane protein 184C OS=Mus musculus GN=Tmem... [more]
T184A_RAT3.534e-2432.80Transmembrane protein 184A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34002H03EF PostHarvC1 Citrus clementina cDNA clone C34002H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930014 ID=FC930014; Name=FC930014; organism=Citrus clementina; type=EST; length=774bp
GGCTTGACTTTCAAGAGTGTGAATTCGGGTTTTTTAACGAGAATTTTAGC
TACAATGAATCCGGCACGAGTCACTTTTATGGCAGCCACTGTTTGCGTGA
TGCTTACCACGCATTTCTCGACACAGCTTCTCTCAGAACACTTTCTTTCC
TGGAAAAAGCCAAAGGAGCAAAAAGCTATAATAATTATCATTCTTATGGC
ACCTATATATGCAATTGACTCTTATGTTGGTTTGATAGATTTTCAGGGGA
GCAAGGCCTTTTTTATGTTCTTGGAATCAGTTAAGGAATGTTATGAGGCC
TTGGTGATAGCCAAGTTCTTGGCCTTGCTGTACAGCTACTTGAATATATC
AATAAGCAAAAACATAGTGCCAGATGAGATCAAAGGAAGGGATATTCACC
ATTCATTTCCAATGACTCTTTTTCAGCCTCGGACAGCTCGTTTGAACCAT
CATACACTAAAGCTTCTCAAGGACTGGACGTGGCAGTTTGTTGTGATCCG
CCCTGTCTGCTCCATATTGATGATTGCTCTTCAACTTCTTGGGTTATATT
CCAATTGGATTAGCTGGACATTCACAATTATTCTTAACATTTCCGTGTCA
CTTGCTTTGTATTCTCTTGTCATCTTCTACCATGTTTTCGCTAAAGAGTT
GGCACCACATAAGCCACTTTCCAAGTTTTTGTGCATTAAGGGAATTGTCT
TTTTCTGCTTTTGGCAGGGTATTGTGCTTGACATTCTGGTAGCATTTGGG
TGTATCAAATCTCATCATTTCTGG
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