FC930028

Overview
NameFC930028
Unique NameFC930028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 4.454e-88
Identity = 154/183 (84.15%), Postives = 171/183 (93.44%), Query Frame = 1
Query:  133 MSNSAIDVPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 681
            MS S++D+P +GGFSFDLC+RNDML +KG+  PSF KTGTTIVGLIF+DGVILGADTRATEGPIV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+  ++
Sbjct:    1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKE 183          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 5.817e-88
Identity = 154/183 (84.15%), Postives = 170/183 (92.90%), Query Frame = 1
Query:  133 MSNSAIDVPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 681
            MS S +DVP +GGFSFDLC+RNDML +KG+  PSF KTGTTIVGLIF+DGVILGADTRATEGPIV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRV+TALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+  ++
Sbjct:    1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKE 183          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.347e-68
Identity = 117/170 (68.82%), Postives = 147/170 (86.47%), Query Frame = 1
Query:  160 SRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFES 669
            +RGGF FDLC RN++L K G+ +  F KTGTTIVG++++ GV+LGADTRATEGPIV DKNCEKIHY+A NIYCCGAGTAADTE+ T ++SS+L+LH+  TG+++RV+TALT+LK+ LF YQG++ AAL+LGG+D  GP LHTIYPHGSTD LP+ TMGSGSLAAMA+FE+
Sbjct:    5 NRGGFDFDLCNRNNVLEKTGLRMKGFMKTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEA 174          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.809e-66
Identity = 123/192 (64.06%), Postives = 150/192 (78.12%), Query Frame = 1
Query:  133 MSNSAIDVPSRGGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRKPD*DE 696
            M+  ++  P  GGFSFD CRRN +L    AK+G  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE   R PD +E
Sbjct:    1 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-PDMEE 191          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.669e-66
Identity = 124/192 (64.58%), Postives = 150/192 (78.12%), Query Frame = 1
Query:  133 MSNSAIDVPSRGGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRKPD*DE 696
            M+  ++  P  GGFSFD CRRN +L    AKKG  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE   R PD +E
Sbjct:    1 MAAVSVFQPPVGGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-PDMEE 191          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.792e-66
Identity = 125/191 (65.45%), Postives = 151/191 (79.06%), Query Frame = 1
Query:  142 SAIDVPSR--GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRKPD*DE 696
            +A+ V  R  GGFSFD CRRN +L    AKKG  LP+ RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE   R PD +E
Sbjct:    2 AAVSVYERPVGGFSFDNCRRNAVLEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-PDMEE 191          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.067e-65
Identity = 122/181 (67.40%), Postives = 145/181 (80.11%), Query Frame = 1
Query:  166 GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRKPD*DE 696
            GGFSFD CRRN +L    AKKG  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE   R PD +E
Sbjct:   12 GGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-PDMEE 191          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.394e-65
Identity = 122/185 (65.95%), Postives = 147/185 (79.46%), Query Frame = 1
Query:  142 SAIDVPSR--GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTR 678
            +A+ V  R  GGFSFD CRRN +L    AKKG  LP+ RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE   R
Sbjct:    2 AAVSVYERPVGGFSFDNCRRNAILEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 186          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.708e-55
Identity = 101/172 (58.72%), Postives = 132/172 (76.74%), Query Frame = 1
Query:  154 VPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFES 669
            +  R GF F+  +RN +L +KG   P    TGTTIVG+I +D ++LGADTRAT GPI+ DKNC+K+H ++PNI+C GAGTAADTE VT M+SS ++LH  +T R+ RVVTALT+LK+HLF YQG++ A LVLGG DC GPHL TI  HGS+D LP+  +GSGSLAA+++ E+
Sbjct:    4 INERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLET 175          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.224e-53
Identity = 100/170 (58.82%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  163 RGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE 666
            RGGFSF+ C+RN  L +   G+ +P  RKTGTTI GL+FQDGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AAD E  T MV+S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD TGP L+ ++PHGS   LPF  +GSG  AA+A+ E
Sbjct:    9 RGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLE 178          
The following BLAST results are available for this feature:
BLAST of FC930028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB7B_ARATH4.454e-8884.15Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH5.817e-8884.15Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_DICDI1.347e-6868.82Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7_HUMAN2.809e-6664.06Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB7_MOUSE3.669e-6664.58Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_BOVIN4.792e-6665.45Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_RAT1.067e-6567.40Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_PIG1.394e-6565.95Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_SCHPO1.708e-5558.72Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB10_HUMAN1.224e-5358.82Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34003A06EF PostHarvC1 Citrus clementina cDNA clone C34003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930028 ID=FC930028; Name=FC930028; organism=Citrus clementina; type=EST; length=764bp
GGATCCTTTCTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTC
GCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAG
TGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATA
GATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGA
TATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGA
CGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGAT
ACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAAT
TCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTG
ACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGT
TATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAA
GAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTG
GTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGT
TCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGC
CATGGCTATGTTTGAATCAAATACAAGAAAGCCTGACTAAGATGAGGGAT
ACAGCTAGTTGTGGACGCATTTGCTCTGGTATATCATGACTTGGGAGTGG
AGCATGCTGATGTC
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