FC930030

Overview
NameFC930030
Unique NameFC930030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930030_ssr147 microsatellite FC930030_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig968 contig Ccv1_Contig968:316..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.529e-47
Identity = 114/237 (48.10%), Postives = 131/237 (55.27%), Query Frame = 2
Query:   68 DLYEGEKGSLGFMELLGVQDFGXXXXXXXXLFDMVQFQAQNQVPSKGASASSTVNV--------TKIE--CSE--LLNQPATPNXXXXXXXXXEALNDEQVKVEEHVH----DEXXXXXXXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRP--------TLGGVPHAGNGVVG 706
            DL   E+ SLGFMELL  Q            F +   Q Q Q       +SS +          +K+E  CS+  L+N PATPN         EALN+E+ K E++      D+                  RQRE R AFMTKSEVDHLEDGYRWRKYGQKAVK+SPFPRSYYRCT+ASCNVKKRVERS+ DPS VVTTYEGQH H SPL  RP        + G     GNG  G
Sbjct:   24 DLAAAERHSLGFMELLSSQQHQDFATVSPHSFLLQTSQPQTQTQPSAKLSSSIIQAPPSEQLVTSKVESLCSDHLLINPPATPNSSSISSASSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCFG 260          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 2
Query:  416 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            +QREPR +FMTKSEVDHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERS+ DP++V+TTYEGQHNHP P
Sbjct:  154 KQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIP 231          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 76/150 (50.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  245 ECSELLNQ-PATPNXXXXXXXXXEALNDEQ------VKVEEHVHDEXXXXXXXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLG 673
            E SE++N  P +PN         EA ND        VK +E    +                  + RE RFAF+TKS++D+L+DGYRWRKYGQKAVK+SP+PRSYYRCT+  C VKKRVERS  DPSIV+TTYEGQH HP P+ PR  +G
Sbjct:  139 ESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQEEGDQQQEQKGTKPQLKAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIG 288          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.906e-35
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 2
Query:  416 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGG---VPHAGNG 697
            ++RE R AFMTKSE+DHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERS+ DPSIV+TTYEG+HNHP P   R T+     + H G G
Sbjct:  118 KEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGG 214          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 2
Query:  416 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            +++EPR +FMTK+EVDHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERSY DP++V+TTYE QHNHP P
Sbjct:  165 KKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIP 242          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 2
Query:  257 LLNQPATPNXXXXXXXXXEALNDEQVKVEEHVHDEXXXXXXXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGN 694
            L++ P TPN         EA+N +  + EE   ++                  +++ P+ +F+T+SEV HL+DGY+WRKYGQK VKDSPFPR+YYRCT+  C+VKKRVERS++DPS V+TTYEGQH HP PLL  P  G  P  G+
Sbjct:   53 LMHFPTTPNSSSS-----EAVNGDDEE-EEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPSNGS 192          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.814e-32
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 2
Query:  416 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGV 679
            R R+PRFAFMTKS+VD+LEDGYRWRKYGQKAVK+SPFPRSYYRCT++ C VKKRVERS  DPSIV+TTYEGQH H +   PR   GG+
Sbjct:  129 RIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFPR---GGI 213          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 2
Query:  416 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH 640
            ++RE R+AF T+S+VD L+DGYRWRKYGQKAVK++PFPRSYY+CT   C VKK+V+R + D  +VVTTY+G H H
Sbjct:   47 KEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  425 EPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            EPR    T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C V+K VER+ TDP  VVTTYEG+HNH  P
Sbjct:  394 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468          

HSP 2 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            +DGY WRKYGQK VK S FPRSYY+CT+  C VKK+VERS  D  +    Y+GQHNH  P
Sbjct:  229 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERS-LDGQVTEIIYKGQHNHEPP 287          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  425 EPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            EPR    T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C V+K VER+ TDP  VVTTYEG+HNH  P
Sbjct:  400 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVP 474          

HSP 2 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            +DGY WRKYGQK VK S FPRSYY+CT  +C VKK+VERS  D  +    Y+GQHNH  P
Sbjct:  250 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERS-LDGQVTEIIYKGQHNHELP 308          
The following BLAST results are available for this feature:
BLAST of FC930030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
WRK23_ARATH1.529e-4748.10Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK28_ARATH1.753e-3582.05Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK48_ARATH2.990e-3550.67Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK71_ARATH3.906e-3570.10Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRKY8_ARATH4.318e-3478.21Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK68_ARATH1.389e-3247.95Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK57_ARATH1.814e-3275.00Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK45_ARATH2.805e-2564.00Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRKY4_ARATH3.664e-2566.67Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH3.664e-2566.67Probable WRKY transcription factor 3 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003A08EF PostHarvC1 Citrus clementina cDNA clone C34003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930030 ID=FC930030; Name=FC930030; organism=Citrus clementina; type=EST; length=720bp
ATAACAATATGGGATCATCACCATTTGCTGATCATCTTTCATTGGTTCTC
AGCTTCGAGGCGTATTTGACTTGTACGAGGGAGAGAAGGGGTCATTAGGG
TTTATGGAGTTACTGGGTGTTCAAGACTTTGGTTCTTCTTCTCCTCCTTC
TTCTTCTTTATTTGATATGGTACAGTTCCAGGCACAGAATCAGGTTCCGT
CTAAAGGAGCATCAGCATCTTCAACTGTCAATGTTACAAAGATTGAATGT
TCTGAGTTGTTGAATCAGCCGGCGACGCCTAACTCTTCCTCGATTTCATC
TGCATCGAGTGAGGCTTTGAATGATGAACAAGTTAAAGTAGAAGAGCATG
TACATGATGAACAAAATCAACAAAAAACCAAGAAACAGTTGAAGCCCAAG
AAGACAAATCAGAAACGACAGAGAGAGCCGAGATTCGCGTTCATGACAAA
GAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGGAAGTACGGTC
AGAAGGCCGTTAAGGACAGCCCCTTTCCTAGGAGTTACTATCGTTGCACC
AGTGCTTCATGTAATGTGAAGAAAAGAGTGGAGAGATCTTACACTGATCC
AAGCATTGTCGTGACGACCTACGAGGGCCAGCACAACCACCCGAGTCCAC
TCCTACCACGTCCAACCCTTGGCGGTGTTCCTCATGCTGGAAACGGTGTC
GTTGGATCCTCTTTTGGTAT
back to top