FC930031

Overview
NameFC930031
Unique NameFC930031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15089 contig Ccv1_Contig15089:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930031 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 2 
Query:  242 SPSSQVSTEATDPPERELETNSQEEK----FDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFE--KACAAVYPSTVQHDIVWFWPN 679
            +P S  ++++T+    E E    +E+    F W   WYP+  V DLD  VP   ++LG D+V+W+DRN+ +W  F D CPHRLAPLSEGR+D+ G LQC YHGW F G G C  IPQA   GP     +  +ACA  +P+ V   +++ WP+
Sbjct:   52 APPSVPTSDSTEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPD 203
The following BLAST results are available for this feature:
BLAST of FC930031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH3.524e-3343.42Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC34003A09EF PostHarvC1 Citrus clementina cDNA clone C34003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930031 ID=FC930031; Name=FC930031; organism=Citrus clementina; type=EST; length=701bp
GGAACAATAATTGCCTCAAGTTTTAATCTTGCTTGATCTCTAGTTTGTGT
TGAGAACGGTGCTGCATGCAGCCATGGAAGCTCTTAGACTCTCCTCGGTT
TCACCTTTTTGTAACGCTACATTCAAACTTGAGTACAATAAGACCCACTT
CACTAAGCCCAAGTTCTTAAGCTTTCAGTTCAGTTCCCTGTCCACTTTAT
CATCTTTCTCATCAAAACCATACAAAATCTTCACCACCTTATCACCATCG
TCACAAGTTTCAACTGAAGCCACAGACCCACCAGAAAGAGAGCTTGAAAC
TAACTCACAAGAGGAGAAATTTGATTGGTTCTCACAGTGGTATCCATTGA
TGCCGGTGTGTGATTTGGACAAGAGAGTCCCTCATGCAAAGAAAGTGTTG
GGGCTTGATGTCGTGGTTTGGTGGGACAGGAATGAGAATGAATGGAGAGT
CTTTGCTGATGCTTGTCCTCACAGATTGGCTCCTTTGTCAGAAGGAAGAA
TTGATCAATGGGGAAGGCTTCAGTGTGTGTATCATGGCTGGTGCTTCAGT
GGCTCGGGTGACTGTAAATTTATCCCTCAGGCTCCCCCAGACGGCCCCCC
GGTCCACACATTCGAGAAAGCATGTGCAGCAGTTTATCCAAGTACCGTCC
AGCATGACATCGTATGGTTTTGGCCAAATATTGCTCCTCGGTACAGGNAT
A
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