FC930037

Overview
NameFC930037
Unique NameFC930037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15091 contig Ccv1_Contig15091:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.612e-92
Identity = 167/170 (98.24%), Postives = 167/170 (98.24%), Query Frame = 3
Query:  210 NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKR NLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCS  L
Sbjct:   52 NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNAL 221          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.612e-92
Identity = 167/170 (98.24%), Postives = 167/170 (98.24%), Query Frame = 3
Query:  210 NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKR NLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCS  L
Sbjct:   52 NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNAL 221          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.706e-58
Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = 3
Query:  219 KNSGDNGN-----EPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK-RKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            KNS D+ +        HAI+KS+CS+T +P+LC+SAI  V + SKKVTSQKDVIE+SLNIT  AV  NY+ +++L+K RK LT REKVALHDCLET+DETLDELH AVEDLE YPNKKSL +H +DLKTL+S+A+TNQ TCLDGFSHD+A+K VR  L  GQ HVEKMCS  L
Sbjct:   47 KNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNAL 219          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.824e-57
Identity = 112/157 (71.34%), Postives = 131/157 (83.44%), Query Frame = 3
Query:  252 HAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL-KRKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            HAILKS CSST YP+LCFSA+AA     K++TSQK+VIE SLN+TT AV+HNYF ++KL+ KRK LT RE  ALHDCLETIDETLDELH AVEDL +YP +KSL +HADDLKTL+S+A+TNQGTCLDGFS+DDA++ VR AL  GQVHVE MCS  L
Sbjct:   59 HAILKSVCSSTLYPELCFSAVAAT--GGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNAL 213          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.122e-56
Identity = 111/170 (65.29%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  213 SRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK-RKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            S+ N     +   HA+L+SSCSSTRYP+LC SA+  V     ++TSQKDVIE S+N+T TAVEHNYF ++KL+K RK LT REK ALHDCLETIDETLDELH+ VEDL  YP KK+L +HA DLKTL+S+A+TNQ TCLDGFSHDDA+K VR AL  GQ+HVE MCS  L
Sbjct:   43 SKANEKRTLSPSSHAVLRSSCSSTRYPELCISAV--VTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNAL 210          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 39/160 (24.38%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  246 PHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKK--SLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            P +  +K+SC+ T YP +C  +++A  +  +   + +++   +L ++ T  +     +++L K K L  R+  A+HDCLE ++++LD + ++ ++++   + K    +    +++T +SAA+T++ TC+DGF+    +  +++++    V V ++ S  L
Sbjct:   24 PANQFIKTSCTLTTYPAVCEQSLSAYAKTIQN--NPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNAL 181          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 42/133 (31.58%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  261 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRKNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSL-SQHADDLKTLMSAAMTNQGTCLDGFSHDDANK 656
            LK+ CS TR+P+ C S+I+ +P  S   T  + + ++SL +    ++ +   + + L ++   +R K AL  C + I++ LD L+  V  +++   KK+L S   +DLKT +SA +T+  TC D       NK
Sbjct:   73 LKAICSVTRFPESCISSISKLP--SSNTTDPETLFKLSLKVIIDELD-SISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNK 202          
BLAST of FC930037 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  255 AILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRKNLTKREKVALHDCLETIDETLDELHKAVEDLEEY--PNKKSL-SQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSMRL 719
            ++L++ C+ T YP  C S+I+ +P  SK  T  K +  +SL +T   + ++  G+ K L  +   +  K AL  C +  D  +D ++  +  L+E     KK+L S    DL T +S+A+T+ GTC D    D+ N  +   L    V+  +  S  L
Sbjct:  457 SVLRTVCNVTNYPASCISSISKLP-LSKTTTDPKVLFRLSLQVTFDEL-NSIVGLPKKLAEETNDEGLKSALSVCADVFDLAVDSVNDTISSLDEVISGGKKNLNSSTIGDLITWLSSAVTDIGTCGDTLDEDNYNSPIPQKLKSAMVNSTEFTSNSL 612          
The following BLAST results are available for this feature:
BLAST of FC930037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PME3_CITSI4.612e-9298.24Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI4.612e-9298.24Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC9.706e-5865.90Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME2_ARATH2.824e-5771.34Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH3.122e-5665.29Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
21KD_DAUCA1.123e-1324.3821 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME1_ARATH1.052e-1131.58Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME26_ARATH8.902e-1129.75Putative pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionC34003B03EF PostHarvC1 Citrus clementina cDNA clone C34003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930037 ID=FC930037; Name=FC930037; organism=Citrus clementina; type=EST; length=726bp
GATTCACTGTCCAATCCATAGCCTTATCTTTTGTTCTCTCTTATCGAGAA
AAAAAATGACCCACATAAAAGAATTCTTCACAAAACTTTCTGAATCTTCT
AGCAACCAAAACATTTCCAATATTCCCAAGAAAAAAAAAGAAACTATTCT
TAGCTCTTTTTGCAACGCTACTCGTTGTTGCTGCCGTAATCGGCATTGTC
GCCGGAGTGAACTCAAGAAAAAACTCCGGCGACAACGGCAACGAGCCTCA
TCATGCTATCCTCAAATCATCATGTAGCAGCACAAGGTACCCGGACTTAT
GCTTTTCCGCTATTGCTGCCGTTCCAGAGGCCTCCAAAAAGGTGACAAGC
CAAAAGGACGTTATTGAAATGTCCTTAAATATCACAACAACAGCCGTGGA
ACACAACTACTTCGGGATTCAGAAGCTCTTGAAGAGAAAGAATCTCACCA
AACGGGAAAAGGTTGCTCTCCATGACTGTCTTGAGACGATCGATGAGACT
CTTGATGAGTTACACAAAGCCGTCGAGGATCTTGAGGAGTACCCGAACAA
GAAATCTTTATCACAGCATGCGGATGATCTCAAAACCCTAATGAGTGCCG
CGATGACCAATCAGGGGACGTGTCTTGATGGGTTCTCTCATGATGATGCT
AATAAGCACGTGCGGGATGCGTTGTCAGACGGCCAGGTTCATGTTGAGAA
GATGTGTAGCATGCGCTTGCTATGAT
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